View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1715_high_218 (Length: 220)
Name: NF1715_high_218
Description: NF1715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1715_high_218 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 94; Significance: 5e-46; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 106 - 207
Target Start/End: Complemental strand, 44081387 - 44081286
Alignment:
| Q |
106 |
aatcataatttaagttgagatttaccttgttatctttaggttcagacctattagctgttttatcattaatcctttccttaatctgatttgacctctgtgc |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| |
|
|
| T |
44081387 |
aatcataatttaagttgagatttaccttgttatctttaggttcagacctattagctgttttatcattaatcctttccttaatctgatttgacttttgtgc |
44081288 |
T |
|
| Q |
206 |
tg |
207 |
Q |
| |
|
|| |
|
|
| T |
44081287 |
tg |
44081286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 30 - 110
Target Start/End: Complemental strand, 44081496 - 44081416
Alignment:
| Q |
30 |
aaggagttgtttgacaataagcaaattaaactataacatcaagcactactcaagatattaatgttcttgcagattcaatca |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44081496 |
aaggagttgtttgacaataagcaaattaaactattacatcaagcactactcaagatattaatgttcttgcagattcaatca |
44081416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University