View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1715_high_22 (Length: 521)
Name: NF1715_high_22
Description: NF1715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1715_high_22 |
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Alignment Details
Target: chr4 (Bit Score: 385; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 1 - 506
Target Start/End: Original strand, 46499055 - 46499559
Alignment:
| Q |
1 |
tgtgtaggaggatgtggaggtgtaaaaactttgcaacatcnnnnnnnnnnnnnnnnaccgtagatttttggagaatttagaatattattttaaattggtt |
100 |
Q |
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| T |
46499055 |
tgtgtaggaggatgtggaggtgtaaaaactttgcaacatttttttttttttttttaaccgtagatttttggagaatttagaatattattttaaattggtt |
46499154 |
T |
|
| Q |
101 |
cggattttcttatgttttatcaaatgaactccatgatcatgcttttcaattttgaggtcgtcattt--gaattcaaagaaattgaaggaaatacttcaaa |
198 |
Q |
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| T |
46499155 |
cgtattttcttatgttttatcaaatgaactccatgatcatgcttttcaattttgaggtcgtcatttttgaattcaaagaaattgaaggaaatacttcaaa |
46499254 |
T |
|
| Q |
199 |
attatttgatttgtttgtgtttggcttttgtggaaagagaggaattccaaacatttttagcagaaaa-aatcatctgtaatgcacattgttggaaagatg |
297 |
Q |
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| T |
46499255 |
attatttgatttgtttgtgtttggcttttgtggaaagagaggaattccaaacatttttagcagaaaaaaatcatctgtaatgcacattgttggaaagatg |
46499354 |
T |
|
| Q |
298 |
aagattcactcttgtggtggccgagatcaaagttactcgatttcaattatcattttaatcaatggtagtcgcatcagttaaattgtgtgtcttggttttg |
397 |
Q |
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| T |
46499355 |
aagattcactcttgtggtggccgagatcaaagttacttgatttcaattatcattttaatcaatggtggtcgtatgagttaaattgtgtgtcttggttttg |
46499454 |
T |
|
| Q |
398 |
gaaaggctaattaaagagtttttcttatggtcctttttacgactcttagcgattgtaactatatttttctccatttgcacaccttatgatttgattgagg |
497 |
Q |
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| T |
46499455 |
gaaaggc----tggagagtttttcctatggttctttttacgactcttagcgattgtaactatatttttctccatttgcacaccttatgatttgattgagg |
46499550 |
T |
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| Q |
498 |
gttaagatt |
506 |
Q |
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| T |
46499551 |
gttaagatt |
46499559 |
T |
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