View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1715_high_224 (Length: 214)

Name: NF1715_high_224
Description: NF1715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1715_high_224
NF1715_high_224
[»] chr3 (1 HSPs)
chr3 (1-199)||(14554655-14554853)
[»] chr5 (14 HSPs)
chr5 (1-199)||(37534696-37534902)
chr5 (1-199)||(37595926-37596139)
chr5 (1-199)||(37641477-37641687)
chr5 (9-184)||(37391312-37391490)
chr5 (64-199)||(37713220-37713358)
chr5 (70-199)||(37441540-37441671)
chr5 (1-199)||(37825509-37825703)
chr5 (72-193)||(37698395-37698519)
chr5 (94-191)||(37704272-37704372)
chr5 (72-199)||(37437297-37437427)
chr5 (75-193)||(37411743-37411864)
chr5 (117-191)||(37380802-37380879)
chr5 (82-193)||(37430359-37430473)
chr5 (136-199)||(37399304-37399367)
[»] chr4 (2 HSPs)
chr4 (9-193)||(24216108-24216295)
chr4 (74-199)||(16841315-16841443)


Alignment Details
Target: chr3 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 199
Target Start/End: Complemental strand, 14554853 - 14554655
Alignment:
Q  1 tagagggaaatcaattggtacatccaaattcataaaggaaaaaggaaagaatactgagaagagagtattaagtgtaagtttctctaaatgggatcctttt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14554853 tagagggaaatcaattggtacatccaaattcataaaggaaaaaggaaagaatactgagaagagagtattaagtgtaagtttctctaaatgggatcctttt 14554754  T
Q  101 ttattctattgccttattttacctttcactttttcttgttgttgcttactcattttacttcctatactttctcattgtgcaaccaacatgacacctctg 199  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14554753 ttattctattgccttattttacctttcactttttcttattgttgcttactcattttacttcctatactttctcattgtgcaaccaacatgacacctctg 14554655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 141; Significance: 4e-74; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 1 - 199
Target Start/End: Complemental strand, 37534902 - 37534696
Alignment:
Q  1 tagagggaaatcaattggtacatccaaa-----ttcataaaggaaaaaggaaagaatactgagaagagagtattaagtgtaagtttctctaaatgggatc 95  Q
    ||||||||||||||||||||||||||||      ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  37534902 tagagggaaatcaattggtacatccaaaatcatatcataaaggaaaaaggaaataatactgagaagagagtattaagtgtaagtttctctaaatgggatc 37534803  T
Q  96 cttttttattctattgccttattttacctttcactttttc---ttgttgttgcttactcattttacttcctatactttctcattgtgcaaccaacatgac 192  Q
    ||||||||||| ||||||||||||||||||||||||||||   ||||||||| ||||||||||||||||||| ||||||||| |||||||| ||||||||    
T  37534802 cttttttattccattgccttattttacctttcactttttcttgttgttgttgattactcattttacttcctacactttctcactgtgcaacaaacatgac 37534703  T
Q  193 acctctg 199  Q
    | |||||    
T  37534702 aactctg 37534696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 199
Target Start/End: Complemental strand, 37596139 - 37595926
Alignment:
Q  1 tagagggaaatcaattggtacatccaaa-----ttcataaaggaaaaaggaaagaatactgagaagagagtattaagtgtaa----gtttctctaaatgg 91  Q
    ||||||||||||||||||||||||||||      |||||||||||||||||||||||||||| |||||||||||||||||||    ||||||||||||||    
T  37596139 tagagggaaatcaattggtacatccaaaatcatatcataaaggaaaaaggaaagaatactgataagagagtattaagtgtaattatgtttctctaaatgg 37596040  T
Q  92 gatccttttttattctattgccttattttacctttcactttttcttgttgt------tgcttactcattttacttcctatactttctcattgtgcaacca 185  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||      |||||||||||||||||||||| |||||||||||||||||| |    
T  37596039 gatccttttttattccattgccttattttacctttcactttttcttgttgttgttgctgcttactcattttacttcctacactttctcattgtgcaacaa 37595940  T
Q  186 acatgacacctctg 199  Q
    |||||||| |||||    
T  37595939 acatgacaactctg 37595926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 1 - 199
Target Start/End: Complemental strand, 37641687 - 37641477
Alignment:
Q  1 tagagggaaatcaattggtacatccaaa-----ttcataaaggaaaaaggaaagaatactgagaagagagtattaagtg----taagtttctctaaatgg 91  Q
    ||||||||||||||||||||||||||||      ||||||||||||||||||| |||||||||||||||||||||||||    |||||||||||||||||    
T  37641687 tagagggaaatcaattggtacatccaaaatcatatcataaaggaaaaaggaaataatactgagaagagagtattaagtgtaattaagtttctctaaatgg 37641588  T
Q  92 gatccttttttattctattgccttattttacctttca---ctttttcttgttgttgcttactcattttacttcctatactttctcattgtgcaaccaaca 188  Q
    ||||||||||||||| |||||||||||||||||||||   ||| || ||||||||| ||||||||||||||||||| ||||||||| |||||||||||||    
T  37641587 gatccttttttattccattgccttattttacctttcacttcttgttgttgttgttgattactcattttacttcctacactttctcactgtgcaaccaaca 37641488  T
Q  189 tgacacctctg 199  Q
    |||||||||||    
T  37641487 tgacacctctg 37641477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 97; E-Value: 7e-48
Query Start/End: Original strand, 9 - 184
Target Start/End: Original strand, 37391312 - 37391490
Alignment:
Q  9 aatcaattggtacatccaaattcataaaggaaaaaggaaagaatactgagaagagagtattaagtgtaagtttctctaaatgggatccttttttattcta 108  Q
    ||||||||||||||| |||| |||| ||  ||||| |||||| ||  ||||||||| | ||||||||||||| ||||||||||| ||||| |||||| ||    
T  37391312 aatcaattggtacattcaaaatcatcaactaaaaacgaaagactatcgagaagagatttttaagtgtaagttgctctaaatggggtccttgtttatttta 37391411  T
Q  109 ttgccttattttacctttcactttttc---ttgttgttgcttactcattttacttcctatactttctcattgtgcaacc 184  Q
    ||||||||||||||||||||||| |||   ||||||||||||||||||||||||||||||||| |||||||||||||||    
T  37391412 ttgccttattttacctttcacttgttcatgttgttgttgcttactcattttacttcctatactctctcattgtgcaacc 37391490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 97; E-Value: 7e-48
Query Start/End: Original strand, 64 - 199
Target Start/End: Complemental strand, 37713358 - 37713220
Alignment:
Q  64 agtattaagtgtaagtttctctaaatgggatccttttttattctattgccttattttacctttcactttttc---ttgttgttgcttactcattttactt 160  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||   |||||||||||||||||||||||||    
T  37713358 agtattaagtgtaagtttctctaaatgggatccttttttattccattgccttattttacctttcacttcttctcgttgttgttgcttactcattttactt 37713259  T
Q  161 cctatactttctcattgtgcaaccaacatgacacctctg 199  Q
    || | ||||||||| |||||||| ||||||||| |||||    
T  37713258 cccacactttctcactgtgcaacaaacatgacaactctg 37713220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 70 - 199
Target Start/End: Complemental strand, 37441671 - 37441540
Alignment:
Q  70 aagtgtaagtttctctaaatgggatccttttttattctattgccttattttacctttcac---tttttcttgttgttgcttactcattttacttcctata 166  Q
    |||||||||| |||||||||||| |||||||||||| |||||||||||||||||||||||   || ||||||||| ||||||||||||||||||||||||    
T  37441671 aagtgtaagtatctctaaatggg-tccttttttattttattgccttattttacctttcacatgttcttcttgttgctgcttactcattttacttcctata 37441573  T
Q  167 ctttctcattgtgcaaccaacatgacacctctg 199  Q
    |||||||| |||| ||| |||||||||||||||    
T  37441572 ctttctcactgtgaaacaaacatgacacctctg 37441540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 1 - 199
Target Start/End: Complemental strand, 37825703 - 37825509
Alignment:
Q  1 tagagggaaatcaattggtacatccaaa-----ttcataaaggaaaaaggaaagaatactgagaagagagtattaagtgtaagtttctctaaatgggatc 95  Q
    |||||||||||||||| |||||||||||      ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37825703 tagagggaaatcaattagtacatccaaaatcatatcataaaggaaaaaggaaagaatactgagaagagagtattaagtgtaagtttctctaaatgggatc 37825604  T
Q  96 cttttttattctattgccttattttacctttcactttttcttgttgttgcttactcattttacttcctatactttctcattgtgcaaccaacatgacacc 195  Q
    ||||||||  |  ||  ||| ||    |||    || || ||||||||| ||||||||||||||||||| ||||||||| |||||||| ||||||||| |    
T  37825603 ctttttta--cctttcacttttt----ctt---gttcttgttgttgttgattactcattttacttcctacactttctcactgtgcaacaaacatgacaac 37825513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 72 - 193
Target Start/End: Complemental strand, 37698519 - 37698395
Alignment:
Q  72 gtgtaagtttctctaaatgggatccttttttattctattgccttattttacctttcactttttcttgtt---gttgcttactcattttacttcctatact 168  Q
    ||||||||| ||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||   |||||||||||||||||||||||| ||     
T  37698519 gtgtaagttgctctaaatggggtccttttttattctattgccttattttgcctttcactttttcttgttgttgttgcttactcattttacttcctacaca 37698420  T
Q  169 ttctcattgtgcaaccaacatgaca 193  Q
     ||||||| |||||||| |||||||    
T  37698419 ctctcattatgcaaccatcatgaca 37698395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 94 - 191
Target Start/End: Complemental strand, 37704372 - 37704272
Alignment:
Q  94 tccttttttattctattgccttattttacctttcactttttcttgttgttgct---tactcattttacttcctatactttctcattgtgcaaccaacatg 190  Q
    ||||||||||||||||||||||||||||| |||||||| |||||||| |||||   |||||||||||||||||| |||||||||||||||| ||||||||    
T  37704372 tccttttttattctattgccttattttacttttcacttgttcttgttattgctgcttactcattttacttcctacactttctcattgtgcagccaacatg 37704273  T
Q  191 a 191  Q
    |    
T  37704272 a 37704272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 72 - 199
Target Start/End: Complemental strand, 37437427 - 37437297
Alignment:
Q  72 gtgtaagtttctctaaatgggatccttttttattctattgccttattttacctttcactttttc---ttgttgttgcttactcattttacttcctatact 168  Q
    ||||||||| ||||||||||| |||||||||||||| ||||||| |||| || ||||||| |||   ||||||||||||||||| |||||| || | |||    
T  37437427 gtgtaagttgctctaaatggggtccttttttattcttttgccttgttttgcccttcacttgttctcgttgttgttgcttactcactttactacccacact 37437328  T
Q  169 ttctcattgtgcaaccaacatgacacctctg 199  Q
    |||||||| |||||||| |||||||||||||    
T  37437327 ttctcattatgcaaccatcatgacacctctg 37437297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 75 - 193
Target Start/End: Original strand, 37411743 - 37411864
Alignment:
Q  75 taagtttctctaaatgggatccttttttattctattgccttattttacctttcactttttcttgttgttgc---ttactcattttacttcctatactttc 171  Q
    |||||| ||||||||||| |||| |||| |||||||| | ||||||||||||||||| ||||||||| |||   ||||||||||||||||||| || |||    
T  37411743 taagttgctctaaatggggtcctgttttgttctattgtcctattttacctttcacttgttcttgttgctgctgtttactcattttacttcctacaccttc 37411842  T
Q  172 tcattgtgcaaccaacatgaca 193  Q
    ||||| |||||| | |||||||    
T  37411843 tcattatgcaactatcatgaca 37411864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 117 - 191
Target Start/End: Original strand, 37380802 - 37380879
Alignment:
Q  117 ttttacctttcactttttcttgt---tgttgcttactcattttacttcctatactttctcattgtgcaaccaacatga 191  Q
    ||||||||||||||| |||||||   ||||||||||||||||||||||| | ||||||||||||||||||||||||||    
T  37380802 ttttacctttcacttgttcttgttgttgttgcttactcattttacttcccacactttctcattgtgcaaccaacatga 37380879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 82 - 193
Target Start/End: Complemental strand, 37430473 - 37430359
Alignment:
Q  82 ctctaaatgggatccttttttattctattgccttattttacctttcactttttcttgt---tgttgcttactcattttacttcctatactttctcattgt 178  Q
    ||||||||||| ||||||| | ||||||| |||||| || |||||||||| |||||||   || |||| |||| ||||||||||||||| || ||| |||    
T  37430473 ctctaaatggggtccttttgttttctatttccttatcttgcctttcacttgttcttgttgatgctgctaactctttttacttcctatacattttcaatgt 37430374  T
Q  179 gcaaccaacatgaca 193  Q
    |||| || |||||||    
T  37430373 gcaagcatcatgaca 37430359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 136 - 199
Target Start/End: Original strand, 37399304 - 37399367
Alignment:
Q  136 ttgttgttgcttactcattttacttcctatactttctcattgtgcaaccaacatgacacctctg 199  Q
    ||||||||| |||||||||||||||| || ||||||||| | |||||||| |||||||||||||    
T  37399304 ttgttgttgattactcattttacttcatacactttctcactatgcaaccatcatgacacctctg 37399367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 71; Significance: 2e-32; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 9 - 193
Target Start/End: Original strand, 24216108 - 24216295
Alignment:
Q  9 aatcaattggtacatccaaattcataaaggaaaaag-gaaagaatactgagaagagagtattaagtgtaagtttctctaaatgggatccttttttattct 107  Q
    |||||||||| | ||||||| |||| ||| |||||  ||||||||| |||||||||||| | ||||||  ||| ||||| ||||| ||||||||||||||    
T  24216108 aatcaattggcagatccaaaatcatcaagtaaaaaaagaaagaatattgagaagagagtgt-aagtgttggttactctatatgggttccttttttattct 24216206  T
Q  108 attgccttattttacctttcactttttc---ttgttgttgcttactcattttacttcctatactttctcattgtgcaaccaacatgaca 193  Q
    | ||||| |||| ||||||||||| |||   |||||||||||||||||||||||||| || |||| |||||| |||||||| |||||||    
T  24216207 aatgcctcatttgacctttcacttgttcatgttgttgttgcttactcattttacttcttacacttactcattctgcaaccatcatgaca 24216295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 74 - 199
Target Start/End: Original strand, 16841315 - 16841443
Alignment:
Q  74 gtaagtttctctaaatgggatccttttttattctattgccttattttacctttcactttttct---tgttgttgcttactcattttacttcctatacttt 170  Q
    ||||||| ||||||||||| |||||||||||| | ||||||| |||| || ||||||| ||||   || || |||||||||| ||||||||  | |||||    
T  16841315 gtaagttgctctaaatggggtccttttttattgttttgccttgttttgcccttcacttgttctttgtgctgctgcttactcactttacttcacacacttt 16841414  T
Q  171 ctcattgtgcaaccaacatgacacctctg 199  Q
     ||||| |||||||||||||||| |||||    
T  16841415 gtcattctgcaaccaacatgacagctctg 16841443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University