View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1715_high_23 (Length: 520)
Name: NF1715_high_23
Description: NF1715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1715_high_23 |
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Alignment Details
Target: chr7 (Bit Score: 144; Significance: 2e-75; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 4 - 231
Target Start/End: Original strand, 42162047 - 42162261
Alignment:
| Q |
4 |
attattctcttactgatggaccaaaataaaatgagattatctacatgtctccatggacaatattgttactatcatcgtcaacaaaacacacctgcaaatc |
103 |
Q |
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| T |
42162047 |
attattctcttactgatggaccaaaataaaatgagattatctacatgtctccatggacaatattgttactatcatcgtcaccaaaacacacctgcaaatc |
42162146 |
T |
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| Q |
104 |
aataaatnnnnnnnnnnnnnnnnnnnnttagatccagcaaactgtcttcaaagtcacaaaaatgaaacttcagtgtttgttgtaggagttactattgttg |
203 |
Q |
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| T |
42162147 |
aataaa-------------ataaaaaattagatccagcaaactgtcttcaaagtcacaaaaatggaacttcagtgtttgttgcaggagttgctattgttg |
42162233 |
T |
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| Q |
204 |
ttgctccaataacatgttgttctcaatt |
231 |
Q |
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| T |
42162234 |
ttgctccaataacatgttgttctcaatt |
42162261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 373 - 505
Target Start/End: Original strand, 42167858 - 42167990
Alignment:
| Q |
373 |
caccactttcagtaactaattcaatcattcatgtgttgttagtattgtccctcttcttattcttgatgatgttgtaattgttgcgagaagcaacataatg |
472 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42167858 |
caccactttcagtaactaattcaatcattcatgtgttgttagtattgtccctcttcttattcttgatgatgttgtaattgttgcgagaagcaacataatg |
42167957 |
T |
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| Q |
473 |
caatgtctcctttggtggttatatccaacaatt |
505 |
Q |
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| T |
42167958 |
caatgtctcctttggtggttatatccaacaatt |
42167990 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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