View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1715_high_25 (Length: 507)
Name: NF1715_high_25
Description: NF1715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1715_high_25 |
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Alignment Details
Target: chr8 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 14 - 465
Target Start/End: Complemental strand, 38943138 - 38942691
Alignment:
| Q |
14 |
ttctgggtgggctttgatggagttgagacatccaagactgttcccatacttggtccccgtgtaaggtcgtcttttgatgaagtgtatttgcgaattgtat |
113 |
Q |
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| T |
38943138 |
ttctgggtgggctttgatggagttgagacatccaagactgttcccatacttgctccccgtgtaagttcgtcttttgatgaagtgttttagcga-ttgtat |
38943040 |
T |
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| Q |
114 |
gtgcgaagaaaaccattgctcagctgactgatatacctgacgatggaacttttattgtaagtgcaactgttaatggattggttgaaggaatttagtagga |
213 |
Q |
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| T |
38943039 |
g--caaagaaaaccattgctcagctgactgatatacctgacgatggaacttttattgtaagtgcaactgttaatggattggttgaaggaatttagtagga |
38942942 |
T |
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| Q |
214 |
atgagagttatgaatatgactgtggttgggtggttgattgaattgcagggtaatttggaacgggaagtgattgtgtacaactaaagggagatgagattat |
313 |
Q |
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| T |
38942941 |
atgagagttatgaatatgactgtggttgggtggttgattgaattgcagggtaatttggaatgggaagtgattgtgtacaactaaa-ggaggtgggattat |
38942843 |
T |
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| Q |
314 |
tgtgatagtatgaattgttgaggttgttgtgattgtctattctttttactatgaagccatttcctgtgtgtgtagattcagttgagnnnnnnnngtagaa |
413 |
Q |
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| T |
38942842 |
tgtggtagtatgaattgttgaggttgttgtcattgtctattctttttactctgaagccatttcctctgtgtgtagattcagttgagttttttaggtacaa |
38942743 |
T |
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| Q |
414 |
gtagattcaggaaagttttttgaaaaggaaaacagtttttaccaaatattct |
465 |
Q |
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| T |
38942742 |
gtagattcaggaaagctttttgaaaaggaaaacagtttttaccaaatattct |
38942691 |
T |
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Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 276 - 394
Target Start/End: Original strand, 13723893 - 13724013
Alignment:
| Q |
276 |
ggaagtgattgtgtacaactaaagggagatgagattattgtg--atagtatgaattgttgaggttgttgtgattgtctattctttttactatgaagccat |
373 |
Q |
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| T |
13723893 |
ggaagtgattgtgttgagctaaaaggagatgaaattattgtagaattgtatgagctattgaggttgttaacattgtgtatgcttttttccaagaagccat |
13723992 |
T |
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| Q |
374 |
ttcctgtgtgtgtagattcag |
394 |
Q |
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| T |
13723993 |
ttcctgtgtttttagattcag |
13724013 |
T |
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