View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1715_high_26 (Length: 505)
Name: NF1715_high_26
Description: NF1715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1715_high_26 |
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| [»] scaffold0651 (2 HSPs) |
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Alignment Details
Target: scaffold0651 (Bit Score: 420; Significance: 0; HSPs: 2)
Name: scaffold0651
Description:
Target: scaffold0651; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 18 - 497
Target Start/End: Complemental strand, 8469 - 7990
Alignment:
| Q |
18 |
aatattatataccatatattaattcttttcatatctgtattaactagttcttttataaggtggtgatcaagagtgatcacaatacagaaagaaagatgag |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||| |
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| T |
8469 |
aatattatataccatatattaattcttttcatatctgtattaactagttcttttataaggtgttgatcatgagtgatcacaatacagaaagaaagatgag |
8370 |
T |
|
| Q |
118 |
aagagagtgtcatccattgttgagtggtgtgagagagaatagcaaatacaaacatggattttctgtagctgagatggagtcactcacaagcatatgtgaa |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8369 |
aagagagtgtcatccattgttgagtggtgtgagagagaatagcaaatacaaacatggattttctgtagctgagatggagtcactcacaagcatatgtgaa |
8270 |
T |
|
| Q |
218 |
gttgtgttgccttcattgccaatggatgatgctcttagaaaagatgatgaatcaagcaaggatgtgcagtctttcttcaacatctctgcttctatgtatc |
317 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8269 |
gttgtgttgccttcattgccaatggatgatgctcttacaaaagatgatgaatcaagcaaggatgtgcagtctttcttcaacatctctgcttctatgtatc |
8170 |
T |
|
| Q |
318 |
caatccctgacgaggtatatatatgtttatatatgtgt--gtgtatttacttttgtctttctgtgnnnnnnnncccctctcttttgatccaaaagaaatt |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| |||||||||||||||||||||| |
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| T |
8169 |
caatccctgacgaggtatatatatgtttatatatgtgtgtgtgtatttacttttgtctttctgtgttttctttccc--ctcttttgatccaaaagaaatt |
8072 |
T |
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| Q |
416 |
cctgaatgcaagaaaactgatccatgtgcaagtgggtgggactcacacttaggttccatatggctgcgttgtgcatgttcat |
497 |
Q |
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| T |
8071 |
cctgaatgcaagaaaactgatccatgtgcaagtgggtgggactcacacttaggttccatatggctgcgttgtgcttgttcat |
7990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0651; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 103 - 341
Target Start/End: Original strand, 354 - 592
Alignment:
| Q |
103 |
agaaagaaagatgagaagagagtgtcatccattgttgagtggtgtgagagagaatagcaaatacaaacatggattttctgtagctgagatggagtcactc |
202 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| |||||||| |||||||||||||||||| |
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| T |
354 |
agaaagaaagatgagaagagagtgtcatccattgttgagtggtatgagagagaatcgcaaatacaaacatgggttttctgtggctgagatggagtcactc |
453 |
T |
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| Q |
203 |
acaagcatatgtgaagttgtgttgccttcattgccaatggatgatgctcttagaaaagatgatgaatcaagcaaggatgtgcagtctttcttcaacatct |
302 |
Q |
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||||||||||||||||| |||| |||||| ||||||||||||||||||| | |||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
454 |
acaagcatatgtgaagtaatgttcccttcactgccaatggatgatgctctcacaaaagatgatgaatcaagcaaggatgtgcaatctttcttcaacatct |
553 |
T |
|
| Q |
303 |
ctgcttctatgtatccaatccctgacgaggtatatatat |
341 |
Q |
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||||||||| |||||||||||||||||||||||||||| |
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| T |
554 |
ctgcttctaaatatccaatccctgacgaggtatatatat |
592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 420; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 18 - 497
Target Start/End: Original strand, 31315228 - 31315707
Alignment:
| Q |
18 |
aatattatataccatatattaattcttttcatatctgtattaactagttcttttataaggtggtgatcaagagtgatcacaatacagaaagaaagatgag |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||| |
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| T |
31315228 |
aatattatataccatatattaattcttttcatatctgtattaactagttcttttataaggtgttgatcatgagtgatcacaatacagaaagaaagatgag |
31315327 |
T |
|
| Q |
118 |
aagagagtgtcatccattgttgagtggtgtgagagagaatagcaaatacaaacatggattttctgtagctgagatggagtcactcacaagcatatgtgaa |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31315328 |
aagagagtgtcatccattgttgagtggtgtgagagagaatagcaaatacaaacatggattttctgtagctgagatggagtcactcacaagcatatgtgaa |
31315427 |
T |
|
| Q |
218 |
gttgtgttgccttcattgccaatggatgatgctcttagaaaagatgatgaatcaagcaaggatgtgcagtctttcttcaacatctctgcttctatgtatc |
317 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31315428 |
gttgtgttgccttcattgccaatggatgatgctcttacaaaagatgatgaatcaagcaaggatgtgcagtctttcttcaacatctctgcttctatgtatc |
31315527 |
T |
|
| Q |
318 |
caatccctgacgaggtatatatatgtttatata--tgtgtgtgtatttacttttgtctttctgtgnnnnnnnncccctctcttttgatccaaaagaaatt |
415 |
Q |
| |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| |
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| T |
31315528 |
caatccctgacgaggtatatatatgtttatatatgtgtgtgtgtatttacttttgtctttctgtgttttctttccc--ctcttttgatccaaaagaaatt |
31315625 |
T |
|
| Q |
416 |
cctgaatgcaagaaaactgatccatgtgcaagtgggtgggactcacacttaggttccatatggctgcgttgtgcatgttcat |
497 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
31315626 |
cctgaatgcaagaaaactgatccatgtgcaagtgggtgggactcacacttaggttccatatggctgcgttgtgcttgttcat |
31315707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 103 - 341
Target Start/End: Original strand, 31330442 - 31330680
Alignment:
| Q |
103 |
agaaagaaagatgagaagagagtgtcatccattgttgagtggtgtgagagagaatagcaaatacaaacatggattttctgtagctgagatggagtcactc |
202 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| |||||||| |||||||||||||||||| |
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| T |
31330442 |
agaaagaaagatgagaagagagtgtcatccattgttgagtggtatgagagagaatcgcaaatacaaacatgggttttctgtggctgagatggagtcactc |
31330541 |
T |
|
| Q |
203 |
acaagcatatgtgaagttgtgttgccttcattgccaatggatgatgctcttagaaaagatgatgaatcaagcaaggatgtgcagtctttcttcaacatct |
302 |
Q |
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||||||||||||||||| |||| |||||| ||||||||||||||||||| | |||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
31330542 |
acaagcatatgtgaagtaatgttcccttcactgccaatggatgatgctctcacaaaagatgatgaatcaagcaaggatgtgcaatctttcttcaacatct |
31330641 |
T |
|
| Q |
303 |
ctgcttctatgtatccaatccctgacgaggtatatatat |
341 |
Q |
| |
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||||||||| |||||||||||||||||||||||||||| |
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| T |
31330642 |
ctgcttctaaatatccaatccctgacgaggtatatatat |
31330680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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