View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1715_high_29 (Length: 499)

Name: NF1715_high_29
Description: NF1715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1715_high_29
NF1715_high_29
[»] chr7 (11 HSPs)
chr7 (47-485)||(31606107-31606548)
chr7 (47-475)||(31616028-31616463)
chr7 (22-189)||(31635748-31635909)
chr7 (22-189)||(31620752-31620914)
chr7 (352-479)||(31597220-31597347)
chr7 (441-492)||(31610334-31610385)
chr7 (436-492)||(31621170-31621226)
chr7 (436-492)||(31636165-31636221)
chr7 (386-431)||(31610252-31610297)
chr7 (342-401)||(31621061-31621120)
chr7 (342-401)||(31636056-31636115)


Alignment Details
Target: chr7 (Bit Score: 212; Significance: 1e-116; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 47 - 485
Target Start/End: Original strand, 31606107 - 31606548
Alignment:
Q  47 tccatcattgcagaaacatctgaattcagttcctccattgttgctgccacacacgccatgagaaccaacgcacctctcgcactccgaataatttcccgtc 146  Q
    |||||| |||||||||||||| |||||| |||||||||  |||||||||||||| |||| |||| |||||||| | |  |||||   |||||||||||||    
T  31606107 tccatctttgcagaaacatctaaattcatttcctccatcattgctgccacacacaccatcagaatcaacgcacttttgacactctccataatttcccgtc 31606206  T
Q  147 catttcaaatcaaaaccgccttttaatgcttcgtctatatcattgagtgttgcaatttgtgtggcttggggtgccaaaattggaaactcaacagtaacac 246  Q
    |||||||||||||||||||||| |||||||| || |||||||||||| |||||||||||| || |||||  |||||||||||||||||||||| ||||||    
T  31606207 catttcaaatcaaaaccgccttgtaatgctttgtttatatcattgagcgttgcaatttgtctgacttggactgccaaaattggaaactcaacaataacac 31606306  T
Q  247 tcggagtacatgtgagtgagagcgaagcagaatccacaattgtgtaggaaactttggtattaccgcaggtagtactaaaaagattcgttatactcgttgt 346  Q
    ||||||||||||||||||||   ||||||| |||||||||||||||||||||||| |||||||| |||||||||||||||| ||| |||||||   ||||    
T  31606307 tcggagtacatgtgagtgaggcggaagcaggatccacaattgtgtaggaaactttagtattaccacaggtagtactaaaaatatttgttatac---ttgt 31606403  T
Q  347 atcacaattgtataacagacttattttagaagaagcattaccatcacgttgaaacaaagtgttactgaatgtgctgtttctaggactgc------cactc 440  Q
     ||||||||||||||||||||||  ||| | ||| ||| ||||||||||||||||| |||||||  ||||||||||||  ||||| |||      || ||    
T  31606404 ttcacaattgtataacagacttacattatacgaaacatcaccatcacgttgaaacatagtgttatcgaatgtgctgttcttaggattgctactcacattc 31606503  T
Q  441 acagcacaaataccactccagtaatcgtctctggcaactgtgagt 485  Q
    ||||||||||||||||||||| |||| |||||||| |||||||||    
T  31606504 acagcacaaataccactccagcaatcttctctggcgactgtgagt 31606548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 47 - 475
Target Start/End: Original strand, 31616028 - 31616463
Alignment:
Q  47 tccatcattgcagaaacatctgaattcagttcctccattgttgctgccacacacgccatgagaaccaacgcacctctcgcactccgaataatttcccgtc 146  Q
    |||||| |||||||||||||| |||||| |||||||||  ||||||||||| || |||| |||| |||| ||| | |  ||||||  |||||||||||||    
T  31616028 tccatctttgcagaaacatctaaattcatttcctccatcattgctgccacatacaccatcagaatcaacacacttttgacactcc--ataatttcccgtc 31616125  T
Q  147 catttcaaatcaaaaccgccttttaatgcttcgtctatatcattgagtgttgcaatttgtgtggcttggggtgccaaaattggaaactcaacagtaacac 246  Q
    |||||||||||||| ||| ||| |||||||| || ||||||||||||  || | |||||||  ||||| | | || ||||||||| ||||||| ||||||    
T  31616126 catttcaaatcaaagccgtcttgtaatgcttggtttatatcattgagatttccgatttgtgcagcttgagttaccgaaattggaatctcaacaataacac 31616225  T
Q  247 tcggagtacatgtgagtgagagcgaagcagaatccacaattgtgtaggaaactttggtattacc---gcaggtagtactaaaa---agattcgttatact 340  Q
    | |||||||||  |||||| |  |||  || ||||   || |||||   |||||   |||||||   ||||||||||||||||   | ||||| |||||     
T  31616226 ttggagtacatcagagtgatactgaacgaggatccgagatggtgtacacaacttcaatattacctctgcaggtagtactaaaaaccacattcggtatac- 31616324  T
Q  341 cgttgtatcacaattgtataacagacttattttagaagaagcattaccatcacgttgaaacaaagtgttactgaatgtgctgtttctaggactgccactc 440  Q
      ||||||||||||||||||||||  ||| || ||||||| ||  ||||||||||||||||| |||| ||   || || |||||  | ||| | ||||||    
T  31616325 --ttgtatcacaattgtataacaggtttacttgagaagaaacaacaccatcacgttgaaacatagtgctatcaaaagttctgttcttgggatttccactc 31616422  T
Q  441 ------acagcacaaataccactccagtaatcgtctctggc 475  Q
          |||||||||||||||||||||||||||||||||||    
T  31616423 acattgacagcacaaataccactccagtaatcgtctctggc 31616463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 22 - 189
Target Start/End: Original strand, 31635748 - 31635909
Alignment:
Q  22 gtgaaccacatgtatctgtataatctccatcattgcagaaacatctgaattcagttcctccattgttgctgccacacacgccatgagaaccaacgcacct 121  Q
    ||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||   ||||||||   ||||| | |||  |||| |||| |||||    
T  31635748 gtgaaccacatatatctgtataagctccatcattgcagaaacatctgaattcagttcc---attgttgc---cacacgcaccaccagaatcaacacacct 31635841  T
Q  122 ctcgcactccgaataatttcccgtccatttcaaatcaaaaccgccttttaatgcttcgtctatatcat 189  Q
    || ||| || | |||||||||| ||||  |||||||||||||||||| ||||||||||| ||||||||    
T  31635842 ctggcaatctgcataatttcccatccacctcaaatcaaaaccgccttgtaatgcttcgtttatatcat 31635909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 22 - 189
Target Start/End: Original strand, 31620752 - 31620914
Alignment:
Q  22 gtgaaccacatgtatctgtataatctccatcattgcagaaacatctgaattcagttcctccattgttgctgccacacacgccatgagaaccaacgcacct 121  Q
    ||||||||||| ||||||||||| |||||||||||||||||||||||||||||||   ||||||||   |||||||| | |||  |||| |||| |||||    
T  31620752 gtgaaccacatatatctgtataagctccatcattgcagaaacatctgaattcagt---tccattgt---tgccacacgcaccaccagaatcaacacacct 31620845  T
Q  122 ct-cgcactccgaataatttcccgtccatttcaaatcaaaaccgccttttaatgcttcgtctatatcat 189  Q
    ||  ||| || | |||||||||| ||||  |||||||||||||||||| ||||||||||| ||||||||    
T  31620846 ctgggcaatctgcataatttcccatccacctcaaatcaaaaccgccttgtaatgcttcgtttatatcat 31620914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 352 - 479
Target Start/End: Original strand, 31597220 - 31597347
Alignment:
Q  352 aattgtataacagacttattttagaagaagcattaccatcacgttgaaacaaagtgttactgaatgtgctgtttctaggactgccactcacagcacaaat 451  Q
    |||||||||||| | ||| |||||| |||| |||||||| ||||||||| ||||||||  |||||||||||||  || || || ||||||  ||||| ||    
T  31597220 aattgtataacaaagttactttagacgaagtattaccataacgttgaaagaaagtgttgttgaatgtgctgttcttatgattgtcactcaaggcacatat 31597319  T
Q  452 accactccagtaatcgtctctggcaact 479  Q
    |  |||||||||||| ||||| ||||||    
T  31597320 attactccagtaatcatctcttgcaact 31597347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 441 - 492
Target Start/End: Original strand, 31610334 - 31610385
Alignment:
Q  441 acagcacaaataccactccagtaatcgtctctggcaactgtgagtatctgtg 492  Q
    ||||||||||||||||||||||||||||||||||||||| ||||| ||||||    
T  31610334 acagcacaaataccactccagtaatcgtctctggcaactctgagtctctgtg 31610385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 436 - 492
Target Start/End: Original strand, 31621170 - 31621226
Alignment:
Q  436 cactcacagcacaaataccactccagtaatcgtctctggcaactgtgagtatctgtg 492  Q
    ||||||||| ||||||||||| ||||||||||||||| || ||||||||| ||||||    
T  31621170 cactcacagtacaaataccaccccagtaatcgtctctagcgactgtgagtttctgtg 31621226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 436 - 492
Target Start/End: Original strand, 31636165 - 31636221
Alignment:
Q  436 cactcacagcacaaataccactccagtaatcgtctctggcaactgtgagtatctgtg 492  Q
    ||||||||| ||||||||||| ||||||||||||||| || ||||||||| ||||||    
T  31636165 cactcacagtacaaataccaccccagtaatcgtctctagcgactgtgagtttctgtg 31636221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 386 - 431
Target Start/End: Original strand, 31610252 - 31610297
Alignment:
Q  386 accatcacgttgaaacaaagtgttactgaatgtgctgtttctagga 431  Q
    ||||||||||||||||| |||||||| ||||||||||||| |||||    
T  31610252 accatcacgttgaaacagagtgttaccgaatgtgctgtttttagga 31610297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 342 - 401
Target Start/End: Original strand, 31621061 - 31621120
Alignment:
Q  342 gttgtatcacaattgtataacagacttattttagaagaagcattaccatcacgttgaaac 401  Q
    |||||||||||||||||||||||| ||| || ||||||| || |||||| | ||||||||    
T  31621061 gttgtatcacaattgtataacagatttagttgagaagaaacactaccataaggttgaaac 31621120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 342 - 401
Target Start/End: Original strand, 31636056 - 31636115
Alignment:
Q  342 gttgtatcacaattgtataacagacttattttagaagaagcattaccatcacgttgaaac 401  Q
    |||||||||||||||||||||||| ||| || ||||||| || |||||| | ||||||||    
T  31636056 gttgtatcacaattgtataacagatttagttgagaagaaacactaccataaggttgaaac 31636115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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