View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1715_high_35 (Length: 485)
Name: NF1715_high_35
Description: NF1715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1715_high_35 |
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Alignment Details
Target: chr4 (Bit Score: 328; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 139 - 470
Target Start/End: Original strand, 55577558 - 55577889
Alignment:
| Q |
139 |
caggagaaagatcctcgtggatgttcaaagctagaacgaattcaagactttgtttgcgcagattttgtttgaggagtatgtaactcagggtggtgcaact |
238 |
Q |
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| T |
55577558 |
caggagaaagatcctcgtggatgttcaaagctacaacgaattcaagactttgtttgcgcagattttgtttgaggagtatgtaactcagggtggtgcaact |
55577657 |
T |
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| Q |
239 |
tcagttgtctctttcaacatatcccatgacgttgattcacaatcttacagtcaaatcttggaggacataattgctagcaactcaaagttgggtcgacgtg |
338 |
Q |
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| T |
55577658 |
tcagttgtctctttcaacatatcccatgacgttgattcacaatcttacagtcaaatcttggaggacataattgctagcaactcaaagttgggtcgacgtg |
55577757 |
T |
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| Q |
339 |
ataaaattgaagatccaagaaccgatcattggcctcgacagatcgtgctttgttacaccctagaggagatgaaaaaggtttacaatgctattggctctga |
438 |
Q |
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| T |
55577758 |
ataaaattgaagatccaagaaccgatcattggcctcgacagatcgtgctttgttacaccctagaggagatgaaaaaggtttacaatgctattggctctga |
55577857 |
T |
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| Q |
439 |
ttggagggccattatggctgtatcttggaaat |
470 |
Q |
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| T |
55577858 |
ttggagggccattatggctgtatcttggaaat |
55577889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 5 - 76
Target Start/End: Original strand, 55577424 - 55577495
Alignment:
| Q |
5 |
aagaatacaaaaaggtagtttaatctgtgtttctgttttcttgatgtttctgtttcttctctattatattcc |
76 |
Q |
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| T |
55577424 |
aagaataccaaaaggtagtttaatctgtgtttctgttttcttgatgtttctgtttcttctctattatattcc |
55577495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 316 - 359
Target Start/End: Original strand, 4373028 - 4373071
Alignment:
| Q |
316 |
caactcaaagttgggtcgacgtgataaaattgaagatccaagaa |
359 |
Q |
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| T |
4373028 |
caactcaaagttgggccgacttgataaaattgaacatccaagaa |
4373071 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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