View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1715_high_41 (Length: 458)
Name: NF1715_high_41
Description: NF1715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1715_high_41 |
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Alignment Details
Target: chr7 (Bit Score: 352; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 1 - 377
Target Start/End: Complemental strand, 33268540 - 33268164
Alignment:
| Q |
1 |
aaacaagacaaaaaacaacattgatcatataaaaaagtgtacctaggcatcaatccatcaggttgaattccatgctcaagacaataaagctcccaacatg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33268540 |
aaacaagacaaaaaacaacattgatcatataaaaaagtgtacctaggcatcaatccatcaggttgaattccatgctcaagacaataaagctcccaacatg |
33268441 |
T |
|
| Q |
101 |
aattccctacttgaattccagcttgtccaatatgaatacttattatctctctcatcttctatatgtgctgcaaatgaaaatcacaaggaggaggaaagtg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33268440 |
aattccctacttgaattccagcttgtccaatatgaatacttattatctctctcatcttctatatgtgctgcaaatgaaaatcacaaggaggaggaaagtg |
33268341 |
T |
|
| Q |
201 |
caaaggagagnnnnnnntacagcaaagaagaatgttagatatttaatttctcactttaaagtttataatatgatgatgacataaactctcaataagtgaa |
300 |
Q |
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|||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33268340 |
caaaggagagaaaaaaatacagcaaagaagaatcttagatatttaatttctcactttaaagtttataatatgatgatgacataaactctcaataagtgaa |
33268241 |
T |
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| Q |
301 |
gggctaaaaaagtcaaatggctacatacttttaattaattaaacagttgataaaatattaaaataattaacaaagtt |
377 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33268240 |
gggctaaaaaagtcaaatggctacatacttttaattaattaaacagttgataaaatattaaaataattaacaaagtt |
33268164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 402 - 444
Target Start/End: Complemental strand, 33268161 - 33268119
Alignment:
| Q |
402 |
taataagtaatacgtggggttgaaacttgaaagggaccatgct |
444 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33268161 |
taataagtaatacgtggggttgaaacttgaaagggaccatgct |
33268119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 54 - 160
Target Start/End: Original strand, 10034470 - 10034576
Alignment:
| Q |
54 |
tccatcaggttgaattccatgctcaagacaataaagctcccaacatgaattccctacttgaattccagcttgtccaatatgaatacttattatctctctc |
153 |
Q |
| |
|
||||||||||||||| ||||| ||||||||||| ||||||||||||||||| || || |||||||||||||||||||||||||| ||||||||||||||| |
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| T |
10034470 |
tccatcaggttgaatgccatgttcaagacaatatagctcccaacatgaattaccaacctgaattccagcttgtccaatatgaatgcttattatctctctc |
10034569 |
T |
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| Q |
154 |
atcttct |
160 |
Q |
| |
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|| |||| |
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| T |
10034570 |
attttct |
10034576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 41 - 155
Target Start/End: Original strand, 35670650 - 35670764
Alignment:
| Q |
41 |
acctaggcatcaatccatcaggttgaattccatgctcaagacaataaagctcccaacatgaattccctacttgaattccagcttgtccaatatgaatact |
140 |
Q |
| |
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|||||||||||| || ||||| ||||| ||||| || ||||| ||||||||||| || ||||| || ||||| ||||| ||||| || || |||||||| |
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| T |
35670650 |
acctaggcatcatgccgtcaggctgaatgccatgttcgagacagtaaagctcccagcaagaattaccgacttggattccggcttgaccgatgtgaatact |
35670749 |
T |
|
| Q |
141 |
tattatctctctcat |
155 |
Q |
| |
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|| || |||||||| |
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|
| T |
35670750 |
gataatttctctcat |
35670764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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