View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1715_high_47 (Length: 439)
Name: NF1715_high_47
Description: NF1715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1715_high_47 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 397; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 16 - 432
Target Start/End: Complemental strand, 29504489 - 29504073
Alignment:
| Q |
16 |
atgtttagtaaggttttaaattacggttgattgcagtttcaacgtgatattcaatgtttagcaaacatgtgtcatagtttaacaccatacacttggttac |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29504489 |
atgtttagtaaggttttaaattacggttgattgcagtttcaacgtgatattcaatgtttagcaaacatgtgtcatagtttaacaccatacacttggttac |
29504390 |
T |
|
| Q |
116 |
tttctcatttgttctcaaattgttattgttatgatgtctacatgccagagttgtgtctgcatcaatatttcctaggctacaagcctgcaatgtagtcagt |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
29504389 |
tttctcatttgttctcaaattgttattgttatgatgtctacatgccatagttgtgtctgcatcaatatttcgtaggctacaagcctgcaatgtagtcagt |
29504290 |
T |
|
| Q |
216 |
gatcccacaaacttttgtctatcttattgtttagatgaataatgatcaaagttacgtatatcgtcttaatggtgctaatgtttagtaaggtttcattgtg |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
29504289 |
gatcccacaaacttttgtctatcttattgtttagatgaataatgatcaatgttacgtatatcgtcttaatggtgctaatgttcagtaaggtttcattgtg |
29504190 |
T |
|
| Q |
316 |
tgattgatgttgcaatttaatcacaatcattgatgtgtgaaaatttgcagatgatatggctgatgcggccacatttgcagttgtagatctctcgaaaacc |
415 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
29504189 |
tgattgatgttgcaatttaatcacaatcattgatgtgtgaaaatttgcagatgatatggctgatggggccacatttgcagttgtagatctctcgaaaacc |
29504090 |
T |
|
| Q |
416 |
ttcgcattgcccctatg |
432 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
29504089 |
ttcgcattgcccctatg |
29504073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 281 - 417
Target Start/End: Original strand, 8806853 - 8806990
Alignment:
| Q |
281 |
ttaatggtgctaatgtttagtaaggtttcattgtgtgattgatgttgcaatttaatcacaatca-ttgatgtgtgaaaatttgcagatgatatggctgat |
379 |
Q |
| |
|
||||||||| | |||||||||||||||||| || ||||| | ||||||| ||| ||||||| |||||||||||||||||| ||| | |||||||||| |
|
|
| T |
8806853 |
ttaatggtggttatgtttagtaaggtttcaaattgcgattgttattgcaatgcaattacaatcacttgatgtgtgaaaatttgaagaagctatggctgat |
8806952 |
T |
|
| Q |
380 |
gcggccacatttgcagttgtagatctctcgaaaacctt |
417 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
8806953 |
gcagccacatttgcagttgtagatctctcgaaaacctt |
8806990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University