View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1715_high_49 (Length: 434)
Name: NF1715_high_49
Description: NF1715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1715_high_49 |
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Alignment Details
Target: chr5 (Bit Score: 402; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 11 - 416
Target Start/End: Complemental strand, 1445262 - 1444857
Alignment:
| Q |
11 |
cagagaacaccaaccttattgaactcagatcaaactccgccaccgacggactcttcgccaacgccaaaaccaacggcggaacaaccatcgccaccgtaac |
110 |
Q |
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| T |
1445262 |
cagacaacaccaaccttattgaactcagatcaaactccgccaccgacggactcttcgccaacgccaaaaccaacggcggaacaaccatcgccaccgtaac |
1445163 |
T |
|
| Q |
111 |
cttatgtttttgtataagaccaagcaaagtcccaatctcaaatttatgcatcaacaaaaccccacttcctgctctcagtgcacacaataacacactgttg |
210 |
Q |
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| T |
1445162 |
cttatgtttttgtataagaccaagcaaagtcccaatctcaaatttatgcatcaacaaaaccccacttcctgctctcagtgcacacaataacacactgttg |
1445063 |
T |
|
| Q |
211 |
agagaaaatatatgaaacaatggaagaacacaaagaagaacatcttctgttgttaaatgtagatttggattctctccatccacttgttgtgccacacttg |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1445062 |
agagaaaatatatgaaacaatggaagaacacaaagaagaacatcttctgttgttaaatgtagatttggattctctccatccacttgttgtgccacacttg |
1444963 |
T |
|
| Q |
311 |
ttgttaaactcttgtgtgttagaatcactcctttaggtaatcctgttgttcctgaagaaaatggtagcgccaccgcgtcttctggatcgatctccactac |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1444962 |
ttgttaaactcttgtgtgttagaatcactcctttaggtaatcctgttgttcctgaagaaaatggtagcgccaccgcgtcttctggatcgatctccactac |
1444863 |
T |
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| Q |
411 |
cggaat |
416 |
Q |
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|||||| |
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| T |
1444862 |
cggaat |
1444857 |
T |
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