View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1715_high_5 (Length: 640)
Name: NF1715_high_5
Description: NF1715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1715_high_5 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 251; Significance: 1e-139; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 19 - 287
Target Start/End: Complemental strand, 38097512 - 38097247
Alignment:
| Q |
19 |
aaattatttttcttcatactccattgatgaatcaacttataaaagaaatttgataggcttttattttattcaaatcaagttaacttgtattattatttca |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
38097512 |
aaattatttttcttcatactccattgatgaatcaacttataaaagaaatttgataggcttttattttattcaaatcaagttaacttgtattatt---tca |
38097416 |
T |
|
| Q |
119 |
aacgaattcatggcacaatcatatatagaagaatgaaaattacccgaggagcataagagaaagaagtttgtgccaaagcaggagtactatcattagtttg |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38097415 |
aacgaattcatggcacaatcatatatagaagaatgaaaattatccgaggagcataagagaaagaagtttgtgccaaagcaggagtactatcattagtttg |
38097316 |
T |
|
| Q |
219 |
tcgcctagtgaatacaacctctaagttgttgcaattagataaatgactctaagtagagtcatcaataat |
287 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38097315 |
tcgcctagtgaatacaacctctaagttgttgcaattagataaatgactctaagtagagtcatcaataat |
38097247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 482 - 623
Target Start/End: Complemental strand, 38096967 - 38096829
Alignment:
| Q |
482 |
gaccagaccagaccagatcaccatcatttcctactctctttggatgatttcataagcggtatgcatttctctttcactnnnnnnnnttttgcctccctct |
581 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
38096967 |
gaccagaccataccagatcaccatcatttcctactctctttggatgatttcataagcggtatgcatttctctttcact---cccccttttgcctccctct |
38096871 |
T |
|
| Q |
582 |
tttcctcttttgtttcctttaacttcacctcatccatcccta |
623 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38096870 |
tttcctcttttgtttcctttaacttcacctcatccatcccta |
38096829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 334 - 461
Target Start/End: Complemental strand, 38097152 - 38097020
Alignment:
| Q |
334 |
aggcttgcattaaggtcacaaatgcactttactaaataagatga-----aatcgagatttgaagagaaattaatattacatgcatcaacctataattgct |
428 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
38097152 |
aggcttgcattaaggtcagaaatgcactttactaaataagatgagatgaaatcgggatttgaaaagaaattaatattacatgcatcaacctataattgct |
38097053 |
T |
|
| Q |
429 |
agtgtactcattacatattctacctagactaga |
461 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
38097052 |
agtgtactcattacatattctacctagactaga |
38097020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 170 - 249
Target Start/End: Original strand, 6783773 - 6783852
Alignment:
| Q |
170 |
cataagagaaagaagtttgtgccaaagcaggagtactatcattagtttgtcgcctagtgaatacaacctctaagttgttg |
249 |
Q |
| |
|
||||||||| |||||||||||||||| || ||| | ||||||||||| |||||| ||||| ||||| | ||||||||| |
|
|
| T |
6783773 |
cataagagatagaagtttgtgccaaaacatgagctccatcattagtttttcgcctggtgaaaacaacttgaaagttgttg |
6783852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University