View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1715_high_50 (Length: 430)
Name: NF1715_high_50
Description: NF1715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1715_high_50 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 374; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 1 - 415
Target Start/End: Original strand, 41751586 - 41752000
Alignment:
| Q |
1 |
caagcttagataaattaataagatgaaatgatcaaatcattgaactttaacccaaagtttttggcctgtctcacaacgctttccaacagagcagaagaaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41751586 |
caagcttagataaattaataagatgaaatgatcaaatcattgaactttaacccaaagtttttggcctgtctcacaacgctttccaacagagcagaagaaa |
41751685 |
T |
|
| Q |
101 |
taatagtccccaggcttgtccaaagtaacactagagttccctctgaagtatgtgtagatggtatctttgatagtgcaatgatcatagtcatctttgtata |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41751686 |
taatagtccccaggcttgtccaaagtaacactagagttccctctgaagtatgtgtagatggtatctttgatagtgcaatgatcatagtcatctttgtata |
41751785 |
T |
|
| Q |
201 |
cctgaacaacggtgctcatccctgggttgtagttgaaaactgcaannnnnnnatctaccttgttaatttctaatatcaattatgttatattcttcaatag |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| ||||||||| |
|
|
| T |
41751786 |
cctgaacaacggtgctcatccctgggttgtagttgaaaactgcaatttttttatctaccttgttaatttctaatatcaattcggttatatacttcaatag |
41751885 |
T |
|
| Q |
301 |
atcctattatgctggaattcaaaggagtcatgtgtgagatctcacaattaaaattcatttacatattttataaattgtgtaattcattaaattttaaccg |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
41751886 |
atcctattatgctggaattcaaaggagtcatgtgcgagatctcacaattaaaattcatttacatattttataaattgtgtaattcattaaattttatccg |
41751985 |
T |
|
| Q |
401 |
tgagatctcaaacat |
415 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
41751986 |
tgagatctcaaacat |
41752000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University