View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1715_high_56 (Length: 412)
Name: NF1715_high_56
Description: NF1715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1715_high_56 |
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Alignment Details
Target: chr3 (Bit Score: 364; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 19 - 402
Target Start/End: Original strand, 25816643 - 25817026
Alignment:
| Q |
19 |
caggtttgatccaattttgaattcaagatatgatgccctttcgaagcagagccagaactttatcgagagcagcagcatggcgagctttaattccatgctt |
118 |
Q |
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| T |
25816643 |
caggttttatccaattttgaattcaagatatgatgccctttcgaagcagagccagaactttatcgagagcagcagcatggcgagctttaattccatgctt |
25816742 |
T |
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| Q |
119 |
ccagatgctacctcagttacattggagccttcaactgccttctccggtttgcgctctcgtgatagaaaattagaattgggcgacactagcaacacctcaa |
218 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
25816743 |
ccagatgctacctcagttacattggagccttcaacttccttctctggtttgcgctctcgtgatagaaaattagaattgggcgacactagcaacacttcaa |
25816842 |
T |
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| Q |
219 |
caatggctgctgcatcaaatgttcatgagccggatgtaggttgggttgatgaacttgtggattgaggatgatccaacattggaatctgattaacatggtg |
318 |
Q |
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| T |
25816843 |
caatggctgctgcatcaaatgttgatgagccggatgtaggttgggttgatgaacttgtggattgaggatgatccaacattggaatctgattaacatggtg |
25816942 |
T |
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| Q |
319 |
ttgaagttgaagatcaactgcaatgccataatccggacgatgttccatcttagccggagcagttgtgcatgttattcacctttg |
402 |
Q |
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| T |
25816943 |
ttgaagttgaagatcaactgcaatgccataatccggacgatgttccatcttagccggagcagttgtgcatgttattcacctttg |
25817026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 36 - 192
Target Start/End: Original strand, 25822459 - 25822615
Alignment:
| Q |
36 |
tgaattcaagatatgatgccctttcgaagcagagccagaactttatcgagagcagcagcatggcgagctttaattccatgcttccagatgctacctcagt |
135 |
Q |
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| T |
25822459 |
tgaattcaagatatgatgccttttcaaatcggagccagagctttttcgagtgcagcagcgtggcaagctttaattccaagcttccttctgctacctcagt |
25822558 |
T |
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| Q |
136 |
tacattggagccttcaactgccttctccggtttgcgctctcgtgatagaaaattaga |
192 |
Q |
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| T |
25822559 |
tgcattagaaccttctactgccttctctgattggcactcccctgatagaaaagtaga |
25822615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 330 - 393
Target Start/End: Original strand, 25822800 - 25822863
Alignment:
| Q |
330 |
gatcaactgcaatgccataatccggacgatgttccatcttagccggagcagttgtgcatgttat |
393 |
Q |
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| T |
25822800 |
gatcaactgcaatgccataatccggatgttgttccatcttagccggagcaattgtgcatgttat |
25822863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 319 - 357
Target Start/End: Original strand, 25819391 - 25819429
Alignment:
| Q |
319 |
ttgaagttgaagatcaactgcaatgccataatccggacg |
357 |
Q |
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| T |
25819391 |
ttgaagttgaagatcaactgcaatgccataatccggacg |
25819429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 325 - 357
Target Start/End: Original strand, 25813695 - 25813727
Alignment:
| Q |
325 |
ttgaagatcaactgcaatgccataatccggacg |
357 |
Q |
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| T |
25813695 |
ttgaagatcaactgaaatgccataatccggacg |
25813727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 49 - 192
Target Start/End: Original strand, 33648607 - 33648747
Alignment:
| Q |
49 |
tgatgccctttcgaagcagagccagaactttatcgagagcagcagcatggcgagctttaattccatgcttccagatgctacctcagttacattggagcct |
148 |
Q |
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| T |
33648607 |
tgatgccttttcgaagcgtagccaaagctttattgagtgcagcagcatggcgagatttaattccgagcttccttctgctagctcagttgccatggaacct |
33648706 |
T |
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| Q |
149 |
tcaactgccttctccggtttgcgctctcgtgatagaaaattaga |
192 |
Q |
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| T |
33648707 |
t---ctgccttctctggttggggctctcctgatggaaaattaga |
33648747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 323 - 355
Target Start/End: Original strand, 33649096 - 33649128
Alignment:
| Q |
323 |
agttgaagatcaactgcaatgccataatccgga |
355 |
Q |
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| T |
33649096 |
agttgaagatcaactgcaatgctataatccgga |
33649128 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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