View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1715_high_58 (Length: 407)
Name: NF1715_high_58
Description: NF1715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1715_high_58 |
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Alignment Details
Target: chr6 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 37 - 382
Target Start/End: Original strand, 1664725 - 1665070
Alignment:
| Q |
37 |
cctatttgtttgagttcttatcttgaaatgaaagtataataaaggattgaagagtttgtttgaattaaaattgatgttttagagttaaattttgcagttt |
136 |
Q |
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| T |
1664725 |
cctatttgtttgagttcttatcttgaaatgaaagtataataaaggattgaagagtttgtttgaattaaaattgatgttttagagttaaattttgcagttt |
1664824 |
T |
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| Q |
137 |
tgtcaactatgtcaagtacttgttattgtgattttatttgtccatattttctgctctttttcattgtaaaattaagttagacatgagtccaaactttgct |
236 |
Q |
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| T |
1664825 |
tctcaactatgtcaagtacttgttattgtgattttatttgtccatattttctgctctttttcattgtaaaattaagttagacatgagtccaaactttgct |
1664924 |
T |
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| Q |
237 |
gtcttttatttccatgagttctttaaagaaccatggaagttgatagacttcggttatttttatcgatcgtggaccaccgcaattttggaactttgtagat |
336 |
Q |
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| T |
1664925 |
gtcttttatttccatgagttctttaaagaaccatggaagttgatagacttcggttatttttatcgatcgtggaccaccgcaattttggaactttgtagat |
1665024 |
T |
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| Q |
337 |
caaaatttaaaaatcatgtgattcacaagattaagtatcatttacc |
382 |
Q |
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| T |
1665025 |
caaaatttaaaaatcatgtgattcacaagattaagtatcatttacc |
1665070 |
T |
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