View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1715_high_63 (Length: 387)
Name: NF1715_high_63
Description: NF1715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1715_high_63 |
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Alignment Details
Target: chr2 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 1 - 371
Target Start/End: Complemental strand, 34548044 - 34547670
Alignment:
| Q |
1 |
ttttatgtgggagaaatcatcaccttactagccattttgtaaagattgaattagatccaaaatcagacgacgtggttaaaatccatctaaaactcattga |
100 |
Q |
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| T |
34548044 |
ttttatgtgggagaaatcatcaccttactagccattttgtaaagattgaattagatccaaaatcagacgacgtagttaaaatccatctaaaactcattga |
34547945 |
T |
|
| Q |
101 |
atcacctgctattagattactattatcggctcactcagatcacattttgaacattttatctttaacgtgatcgagtaagaatgtaatattggataagata |
200 |
Q |
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| T |
34547944 |
atcgcctgctattagattactattatcggctcactcatatcacactttaaacattttgtctttagc-tgatcgagtaagaatgtaatattgaataagata |
34547846 |
T |
|
| Q |
201 |
atgtttgaagttagctttgtaagtgggaacatttctcatcttacaatctcattgagtaaggtttgaaccaatctcaatccgaaattctaataactagtaa |
300 |
Q |
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| T |
34547845 |
atgtttgaagttagctttgtaagtgggaacatttctcatcttacaatctcattgagtaaggtttgaaccaatctcaatccgaaattctaataactagtaa |
34547746 |
T |
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| Q |
301 |
taag-----nnnnnnnnatcaaataataactagtaataagtaagacaagtaaaaataaattaaacaaccatgttga |
371 |
Q |
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| T |
34547745 |
taagtttttttttttttatccaataataactagtaataagtaagacaagtaaaaataaattaaacaaccatgttga |
34547670 |
T |
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