View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1715_high_69 (Length: 373)
Name: NF1715_high_69
Description: NF1715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1715_high_69 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 211; Significance: 1e-115; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 159 - 373
Target Start/End: Complemental strand, 31828429 - 31828215
Alignment:
| Q |
159 |
tgcatatgaatttgaagtaaaaccaattagcattattactacaaaacaaaccttgcttttcttcaagttatcatctctcattgttgatacagcttcatat |
258 |
Q |
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| T |
31828429 |
tgcatatgaatttgaagtaaaaccaattagcattattactacaaaacaaaccttgcttttcttcaagttatcatctctcattgttgatacagcttcatat |
31828330 |
T |
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| Q |
259 |
agattttgtttcttcaatctaatatagttttttgtgttgaaacaatgaagttggttgcttcaagaagggttaaagttgaaaaagcagagaatgagatgaa |
358 |
Q |
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| T |
31828329 |
agattttgtttcttcaatctaatatagttttttgtgttgaaacaatgaagttggttgcttcaagaagggttaaagttgaaaaagtagagaatgagatgaa |
31828230 |
T |
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| Q |
359 |
agtacaagtaataaa |
373 |
Q |
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| T |
31828229 |
agtacaagtaataaa |
31828215 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 12 - 97
Target Start/End: Complemental strand, 31828561 - 31828476
Alignment:
| Q |
12 |
acatcatcatccgcttgaaagtcttcatttttactcttgatattaaaccatttcttgaccaaagttttgggccatgaaagcttcag |
97 |
Q |
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| T |
31828561 |
acatcatcatccgcttgaaagtcttcatttttactcttgatattaaaccatttcttgaccaaagttttgggccatgaaagcttcag |
31828476 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 16 - 96
Target Start/End: Original strand, 38124245 - 38124325
Alignment:
| Q |
16 |
catcatccgcttgaaagtcttcatttttactcttgatattaaaccatttcttgaccaaagttttgggccatgaaagcttca |
96 |
Q |
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| T |
38124245 |
catcatctgcttgaaagtcttgagatttggtcttgatattgaaccattttttgaccaatgtttttggccatgaaagcttca |
38124325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 215 - 259
Target Start/End: Original strand, 38124421 - 38124465
Alignment:
| Q |
215 |
ttttcttcaagttatcatctctcattgttgatacagcttcatata |
259 |
Q |
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| T |
38124421 |
ttttcttcaagttttcatctctcattgttgagaaaacttcatata |
38124465 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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