View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1715_high_7 (Length: 631)
Name: NF1715_high_7
Description: NF1715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1715_high_7 |
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Alignment Details
Target: chr5 (Bit Score: 529; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 529; E-Value: 0
Query Start/End: Original strand, 33 - 604
Target Start/End: Complemental strand, 18662444 - 18661872
Alignment:
| Q |
33 |
caaaggcagttatgaagaagtgaaacttggcaactggggatagcagaaataggacagatccatgttaagatgtccgaccgtagcagtggagatcagttcc |
132 |
Q |
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| T |
18662444 |
caaaggcagttatgaagaagtgaaacttggcaactggggatagcagaaataggacagatccatgttaagatgtccgaccgtagcagtggagatcagttcc |
18662345 |
T |
|
| Q |
133 |
tataattttaggacagaagtgaaattttaggaatgtggagatcagttccttgcaagtctgttgacggtagctttggtaagaaaatccgttggaaaaatat |
232 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18662344 |
tataattttaggacagaagtgaaattttaggaatgtggagatcagttccttgcaagtctgttgacggtagctttggtaagaaaatccgttggaaaaatat |
18662245 |
T |
|
| Q |
233 |
ccagttataatagtaggcagctgcagcaattatcagagaatctggatggaatttgtgcactgtgtactaaaagaaagtaagtatagagataatggtatta |
332 |
Q |
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||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18662244 |
ccagttataatagcaggcagctgcagcaattatcagagaagctggatggaatttgtgcactgtgtactaaaagaaagtaagtatagagataatggtatta |
18662145 |
T |
|
| Q |
333 |
ttataatgtagttcagggaacacatcagcagaacaatgatggcataggtttagaggatgtacgagaaagaaaataaagatattgacttatttatcaatat |
432 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
18662144 |
ttataatgtagttcagggaacacatcagcagaacaatgatggcataggtttagaggatggacgagaaagaaaataaagatattgacttatttatcaatat |
18662045 |
T |
|
| Q |
433 |
gaaaaggagccctaaaacagaatctcagatccttgataagccagtctcaaaagataacctaagatact-aagataagaccaacatattatatgatatttt |
531 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| ||||||||||||| |||||||| ||||||| |
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| T |
18662044 |
gaaaaggagccctaaaacagaatctcagatccttgataaaccaatctcaaaagataacctaagatactaaagataagaccaagatattataaaatatttt |
18661945 |
T |
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| Q |
532 |
tcatattattatatctaatagagcagaagctaagttaaattcattttagaacaaatgtcaagtattacactct |
604 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
18661944 |
tcatattattatatctaatagagcagaagctaagttaaattcattttagaacaaatgccaagtattacactct |
18661872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 494; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 494; E-Value: 0
Query Start/End: Original strand, 33 - 610
Target Start/End: Original strand, 15081381 - 15081952
Alignment:
| Q |
33 |
caaaggcagttatgaagaagtgaaacttggcaactggggatagcagaaataggacagatccatgttaagatgtccgaccgtagcagtggagatcagttcc |
132 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
15081381 |
caaaggcagttatgaagaagtgaaacttggcaactggggatagcagaaataggacagatccatgttaagatgtccgact----cagtggagatcagttcc |
15081476 |
T |
|
| Q |
133 |
tataattttaggacagaagtgaaattttaggaatgtggagatcagttccttgcaagtctgttgacggtagctttggtaagaaaatccgttggaaaaatat |
232 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
15081477 |
tataattttaggacagaagtgaaattttaggaatgtggagatcagttccttgcaagtctgttgacggtagctttggtaagaaagtccgttggaaaaatat |
15081576 |
T |
|
| Q |
233 |
ccagttataatagtaggcagctgcagcaattatcagagaatctggatggaatttgtgcactgtgtactaaaagaaagtaagtatagagataatggtatta |
332 |
Q |
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||||||||||||| | ||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15081577 |
ccagttataatagcaagcagcagcagcaattatcagagaagctggatggaatttgtgcactgtgtactaaaagaaagtaagtatagagataatggtatta |
15081676 |
T |
|
| Q |
333 |
ttataatgtagttcagggaacacatcagcagaacaatgatggcataggtttagaggatgtacgagaaagaaaataaagatattgacttatttatcaatat |
432 |
Q |
| |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| |||||||||||||||||||||||| |
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| T |
15081677 |
ttataat--agttcagggaacacatcagcagaacaatgatggcataggtttagaggatggacaagaaagaaaatacagatattgacttatttatcaatat |
15081774 |
T |
|
| Q |
433 |
gaaaaggagccctaaaacagaatctcagatccttgataagccagtctcaaaagataacctaagatactaagataagaccaacatattatatgatattttt |
532 |
Q |
| |
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||||||||| ||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| |
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| T |
15081775 |
gaaaaggagtcctaaaacagaatctcagatccttgataaaccaatctcaaaagataacctaagatactaagataagaccaagatattataagatattttt |
15081874 |
T |
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| Q |
533 |
catattattatatctaatagagcagaagctaagttaaattcattttagaacaaatgtcaagtattacactctgaatcc |
610 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15081875 |
catattattatatctaatagagcagaagctaagttaaattcattttagaacaaatgtcaagtattacactctgaatcc |
15081952 |
T |
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