View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1715_high_70 (Length: 369)
Name: NF1715_high_70
Description: NF1715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1715_high_70 |
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Alignment Details
Target: chr8 (Bit Score: 138; Significance: 5e-72; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 21 - 242
Target Start/End: Original strand, 13417410 - 13417652
Alignment:
| Q |
21 |
ttatattagatgtagcgtgcgaatcttccatcttacgataccaaagaacattattaaataaaatgaacttacaaaaactttattata------------- |
107 |
Q |
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| T |
13417410 |
ttatattagatgtagcgtgcgaatcttccatcttacgagaccaaagaacattattaaataaaatgaacttacataaactttattatataatcttatgtag |
13417509 |
T |
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| Q |
108 |
-------accatatcccactacttcttttgtttcccataattaattttatgttatccttaaccagagacatacccaaa-tccgttatttcacactttttt |
199 |
Q |
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| T |
13417510 |
taatataaccatatccctccacttcctttgtttcccataattaattttatgttatccttaaccaaagacatgcccaaaatccgttatttcacactttttt |
13417609 |
T |
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| Q |
200 |
atttgcctcatacgcatgacacatgacatgtcctcccttttct |
242 |
Q |
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| T |
13417610 |
atttgcctcatgcgcatgacacatgacatgtcctcccttttct |
13417652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 268 - 338
Target Start/End: Original strand, 13417678 - 13417750
Alignment:
| Q |
268 |
gtgtaatgttgggctacaagtattgcaaagactaacccaacttaacaaa---aggagtataatgcatatcaaag |
338 |
Q |
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| T |
13417678 |
gtgtaatgttgggctacaagtat-gcaaagactaacccaacttaacaaaaggaggagtgtaatgcatatcaaag |
13417750 |
T |
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