View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1715_high_72 (Length: 365)
Name: NF1715_high_72
Description: NF1715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1715_high_72 |
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Alignment Details
Target: chr3 (Bit Score: 250; Significance: 1e-139; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 345
Target Start/End: Complemental strand, 9842768 - 9842425
Alignment:
| Q |
1 |
ttagagttatggcttgatacataaaagttcaactttcaccaatattagaacaatgtatgcattttgaagagaaaggacgtactgtatgtaactattcaac |
100 |
Q |
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| T |
9842768 |
ttagagttatggcttgatacatacaagtacaactttcaccaatattagaacaatgtatgcattttgaagagaaaggacgtactgtatgtaactattcaac |
9842669 |
T |
|
| Q |
101 |
aaatgtttataggaacaaaattttttaacaaagataaagaataaaaacatgctgttcttttttatactatagtcggtttctaatcgcaagaagaag--nn |
198 |
Q |
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| T |
9842668 |
aaatgtttataggaacaagaatttttaacaaagataaagaataaaaacatactgttcttttttatactatagtcggtttctaatcgcaagaagaagaaga |
9842569 |
T |
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| Q |
199 |
nnnnnngtaatcggatttgacttcaaaagtattataaaaaattacagcaaatgacttttggaattacaacaatctttcatcaatctttgcacatgatgat |
298 |
Q |
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| T |
9842568 |
aaaaaagtaatcgtatttgacttcaaaagtattgtaaaaaattgcagaaaatgactcttggaattacaacaatctttcatcaatctttgcac---atgat |
9842472 |
T |
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| Q |
299 |
aacagagcaatggaacagaagatttcaaacagtatcatattagcatt |
345 |
Q |
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|||| ||||| |||||||||||||||||||||||||||||||||||| |
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| T |
9842471 |
aacaaagcaacggaacagaagatttcaaacagtatcatattagcatt |
9842425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 174 - 345
Target Start/End: Complemental strand, 9853541 - 9853370
Alignment:
| Q |
174 |
cggtttctaatcgcaagaagaagnnnnnnnngtaatcggatttgacttcaaaagtattataaaaaattacagcaaatgacttttggaattacaacaatct |
273 |
Q |
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| T |
9853541 |
cggtttctaatcgcaagaagaagaaaaaaaagtaatcggatttgacttcaaaagtattataaaaaattacagaaaatgacttttggaattacaacaatct |
9853442 |
T |
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| Q |
274 |
ttcatcaatctttgcacatgatgataacagagcaatggaacagaagatttcaaacagtatcatattagcatt |
345 |
Q |
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| T |
9853441 |
ttcatcaatctttgcacatgatgataacaaagcaatggaacagaagatttcaaacagtatcatattagcatt |
9853370 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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