View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1715_high_78 (Length: 359)
Name: NF1715_high_78
Description: NF1715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1715_high_78 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 95; Significance: 2e-46; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 68 - 289
Target Start/End: Original strand, 12984943 - 12985168
Alignment:
| Q |
68 |
taaggagcatagatttttattgctcccatgctttacacaatgtttcattggagcattgagtgaagacatcaattgttgcattagcataataaattatgct |
167 |
Q |
| |
|
||||||||| | |||| ||| | | |||||||| ||||||| ||||| |||||| ||||||||||||||||||||| |||| |||||||||||| ||||| |
|
|
| T |
12984943 |
taaggagcacaaatttgtatcgtttccatgcttcacacaatatttcactggagctttgagtgaagacatcaattgtggcat-agcataataaatcatgct |
12985041 |
T |
|
| Q |
168 |
ttgagaaaataatcttgcgacaaatttatcttttaaagtgttcaaatttttcag-----ttgttgctgttgtttggtctaggtaccaatctttgaaacgt |
262 |
Q |
| |
|
||| |||||||||| | | ||| |||||||||||||||||| ||||| |||| |||||| |||||||||||||| ||||||||||||||||||| |
|
|
| T |
12985042 |
ccgaggaaataatcttccaataaacttatcttttaaagtgttccaatttgtcagagttgttgttgttgttgtttggtctatgtaccaatctttgaaacgt |
12985141 |
T |
|
| Q |
263 |
ccgagaagtgagtgggggaatcaacct |
289 |
Q |
| |
|
|||| |||| ||||||||| ||||||| |
|
|
| T |
12985142 |
ccgaaaagtaagtgggggagtcaacct |
12985168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 19 - 69
Target Start/End: Complemental strand, 19728487 - 19728437
Alignment:
| Q |
19 |
ctaaagatatcgatttgagttatgtcgtcaaattcattgttcggacattta |
69 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
19728487 |
ctaaagatatcgatttgagttatgtcgtcaaattcattgttcgtacattta |
19728437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 297 - 340
Target Start/End: Original strand, 12985204 - 12985247
Alignment:
| Q |
297 |
gagggattcaactttctcataaatcttccaagatagttaatggg |
340 |
Q |
| |
|
||||||||||||| ||||||||||||| |||||||||||||||| |
|
|
| T |
12985204 |
gagggattcaactatctcataaatctttcaagatagttaatggg |
12985247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 67 - 98
Target Start/End: Complemental strand, 19727771 - 19727740
Alignment:
| Q |
67 |
ttaaggagcatagatttttattgctcccatgc |
98 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
19727771 |
ttaaggagcatagatttttattgctcccatgc |
19727740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University