View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1715_high_79 (Length: 358)
Name: NF1715_high_79
Description: NF1715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1715_high_79 |
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Alignment Details
Target: chr8 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 18 - 354
Target Start/End: Complemental strand, 41299821 - 41299485
Alignment:
| Q |
18 |
caccactgctgccaccttggtggaaactctcaccacttgtgtaagcagcaaccatgtcagaagaagaatgatgcgtattataagatgaaaaatcaatatc |
117 |
Q |
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| T |
41299821 |
caccactgctgccaccttggtggaaactctcaccacttgtgtaagcagcaaccatgtcagaagaagaatgatgcgtattataagatgaaaaatcaatatc |
41299722 |
T |
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| Q |
118 |
aaccgatccaaacgtatccgcggctaattgatgatgattcaaattcttattattagcatcatttttatgatcattgttgatgatagacgagacacattca |
217 |
Q |
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|||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41299721 |
aaccgagccaaacgcatccgcggctaattgatgatgattcaaattcttattattagcatcatttttatgatcattgttgatgatagacgagacacattca |
41299622 |
T |
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| Q |
218 |
gaatcgattcgaaggagtcgtggcttttgatcctcgtgaggttgagtttgagattggttttgaagtacattaagattatcctcttcatgattaatattgt |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41299621 |
gaatcgattcgaaggagtcgtggcttttgatcctcgtgaggttgagtttgagattggttttgaagtacattaagattatcctcttcatgattaatattgt |
41299522 |
T |
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| Q |
318 |
ttcctccgtccgaggttgtcgtgtttctgtgctgctc |
354 |
Q |
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|||||||||||||||||||||||||||| || ||||| |
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| T |
41299521 |
ttcctccgtccgaggttgtcgtgtttctttgttgctc |
41299485 |
T |
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