View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1715_high_83 (Length: 354)
Name: NF1715_high_83
Description: NF1715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1715_high_83 |
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| [»] chr7 (1 HSPs) |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 354
Target Start/End: Original strand, 18511717 - 18512070
Alignment:
| Q |
1 |
gccacacaataaacttcgcaggccaatttnnnnnnnnntcatcatgtactaagatacttaccatctga-aaacattgttcacaacagaacattttgcaga |
99 |
Q |
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| T |
18511717 |
gccacacaataaacttcgcaggccaatttcaaaaaa--tcatcatgtactaagatacttatcatctgctaaacattgttcacaacagaacattttgcaga |
18511814 |
T |
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| Q |
100 |
ttcaaaattaacctacggatgaggaaacaaggaaacaacctacggatgtaccaagaaacaagtgaaatgtaattatgtcttcaacaccatatgatatatt |
199 |
Q |
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| T |
18511815 |
ttcaaaagtaacctacggatgaggaaacaaggaaacaacctacggatgtaccaagaaacaagtgaaatgtaattatgtcttcaacaccatatgatatatt |
18511914 |
T |
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| Q |
200 |
atccatgcaatcnnnnnnnnnnnnnnnnncaata-atacaggacaaacagcagggcacagcttgcttcagtgctagatcaacacaagctagcattaacaa |
298 |
Q |
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| T |
18511915 |
atccatgcaatcaaaataaaaaataaaaacaatatctacaggacaaacagcagggcacagtttgcttcagtgctagatcaacacaagctagcattaacaa |
18512014 |
T |
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| Q |
299 |
ttcacgaggacctctttgtatgagcatgatcagtgtcttgcttactgggagaatca |
354 |
Q |
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| T |
18512015 |
ttcacgaggacctctttgtatgagcatgatcagtgtcttgcttactgggagaatca |
18512070 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 73; Significance: 3e-33; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 238 - 354
Target Start/End: Complemental strand, 14517509 - 14517393
Alignment:
| Q |
238 |
aggacaaacagcagggcacagcttgcttcagtgctagatcaacacaagctagcattaacaattcacgaggacctctttgtatgagcatgatcagtgtctt |
337 |
Q |
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| T |
14517509 |
aggataaatagcagggaacagtctgcttcagtgctagatcaaaacaagctaccattaacaattcacgaggacctctatgtatgagcatgatcagtgcctt |
14517410 |
T |
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| Q |
338 |
gcttactgggagaatca |
354 |
Q |
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| T |
14517409 |
gcttgctaggagaatca |
14517393 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 136 - 211
Target Start/End: Complemental strand, 14517611 - 14517536
Alignment:
| Q |
136 |
aacctacggatgtaccaagaaacaagtgaaatgtaattatgtcttcaacaccatatgatatattatccatgcaatc |
211 |
Q |
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| T |
14517611 |
aacctacgaatgtaccatgaaagatgtgaaatgtaaatacgccttcaacatcacatgatatattattcatgcaatc |
14517536 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 256 - 330
Target Start/End: Original strand, 6953392 - 6953466
Alignment:
| Q |
256 |
cagcttgcttcagtgctagatcaacacaagctagcattaacaattcacgaggacctctttgtatgagcatgatca |
330 |
Q |
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| T |
6953392 |
cagcctgcttcattgcttgatctaaacaaggtagcattaacaattgatgaggacctctttgtatgagcttgatca |
6953466 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 281 - 332
Target Start/End: Original strand, 6920247 - 6920298
Alignment:
| Q |
281 |
acaagctagcattaacaattcacgaggacctctttgtatgagcatgatcagt |
332 |
Q |
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| T |
6920247 |
acaaggtagcattaacagttgatgagaacctctttgtatgagcatgatcagt |
6920298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 261 - 331
Target Start/End: Original strand, 6944430 - 6944500
Alignment:
| Q |
261 |
tgcttcagtgctagatcaacacaagctagcattaacaattcacgaggacctctttgtatgagcatgatcag |
331 |
Q |
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| T |
6944430 |
tgcttcattgcttcatcaaaacaaggtagaattaacagttgatgaggacctctttatatgagcatgatcag |
6944500 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 132 - 205
Target Start/End: Complemental strand, 13112735 - 13112662
Alignment:
| Q |
132 |
aaacaacctacggatgtaccaagaaacaagtgaaatgtaattatgtcttcaacaccatatgatatattatccat |
205 |
Q |
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| T |
13112735 |
aaacaaccttcaaatgtaccaagaaacatgtgtaatgtaaatatgccttcaacatcatagaataaattatccat |
13112662 |
T |
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