View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1715_high_89 (Length: 349)
Name: NF1715_high_89
Description: NF1715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1715_high_89 |
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Alignment Details
Target: chr1 (Bit Score: 289; Significance: 1e-162; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 8 - 333
Target Start/End: Complemental strand, 34002004 - 34001673
Alignment:
| Q |
8 |
agattattcttaaattacatgtggcatcatgttatccccttaaaataacttcttctattgactaaacattatcagaacataaaaagatagttcttcaccc |
107 |
Q |
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| T |
34002004 |
agattattcttaaattacatgtggcatcatgttatccccttaaaataacttcttctattgactaaacattttcagaacataaaaagatagttcttcaccc |
34001905 |
T |
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| Q |
108 |
cttttgtaataaagatattcttaatgtacaaaccaagaacactccttcaagtggacccaaaccttactaatgggataatggagaacaatagccgtaagtt |
207 |
Q |
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| T |
34001904 |
cttttgcaataaagatattcttaatgtacaaaccacgaacactccttcaactggacccaaaccttactaatgggataatggagaacaatagccgtaagtt |
34001805 |
T |
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| Q |
208 |
cagcaatggatgccaactactgactacttggtgacataagcac------ttgcagggatggaatttgggggtggtccaaagttcatgtaatggtgaagtg |
301 |
Q |
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| T |
34001804 |
cagcaatggatgccaactactgactacttggtgacataagcacttggagttggagggatggaatttgggggtggtccaaagttcatgtaatggtgaagtg |
34001705 |
T |
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| Q |
302 |
ggtgaggaacaccatacagcgtgtgttatttg |
333 |
Q |
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| T |
34001704 |
ggtgaggaacaccatacagcgtgtgttatttg |
34001673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 115 - 173
Target Start/End: Complemental strand, 34005520 - 34005462
Alignment:
| Q |
115 |
aataaagatattcttaatgtacaaaccaagaacactccttcaagtggacccaaacctta |
173 |
Q |
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| T |
34005520 |
aataaagatgctcttaatgtacagagcaagaacactccttcaacaggacccaaacctta |
34005462 |
T |
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