View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1715_high_90 (Length: 346)

Name: NF1715_high_90
Description: NF1715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1715_high_90
NF1715_high_90
[»] chr1 (1 HSPs)
chr1 (9-329)||(48013244-48013575)


Alignment Details
Target: chr1 (Bit Score: 186; Significance: 1e-100; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 9 - 329
Target Start/End: Complemental strand, 48013575 - 48013244
Alignment:
Q  9 gattattctaagaattatgtgcacatgactttgttgttgatgctataggatttggaatctgattgcatgtggattaataaaatcccagtcaactgcaccg 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  48013575 gattattctaagaattatgtgcacatgactttgttgttgatgctataggatttggtatctgattgcatgtggattaataaaatcccagtcaactgcaccg 48013476  T
Q  109 tgccctnnnnnnntttt---cacattctaccactcatat------------atttccaccttccacacacacgnnnnnnnntctannnnnnnaaaggaag 193  Q
    ||||||       ||||   |||||||||||||||||||            ||||||||||||||||||||||        ||||       ||||||||    
T  48013475 tgccctaaatttttttttttcacattctaccactcatattatccgctctatatttccaccttccacacacacgaaaaaaaatctatttttttaaaggaag 48013376  T
Q  194 actctacttttttaccatagaaccaaacacatgcatgcttaagatcttgatcacctataaatatgcataaatggtgatattggtaatgtaccagtacagc 293  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    |||||||||||||||||||||||||||||||||||||    
T  48013375 actctacttttttaccatagaaccaaacacatgcatgcttaagatcttaatcacctata----tgcataaatggtgatattggtaatgtaccagtacagc 48013280  T
Q  294 tgtagagactatacaaaacaacaagaggaatggatt 329  Q
    |||||||||||||||| |||||||||||||||||||    
T  48013279 tgtagagactatacaacacaacaagaggaatggatt 48013244  T

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