View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1715_high_91 (Length: 343)
Name: NF1715_high_91
Description: NF1715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1715_high_91 |
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Alignment Details
Target: chr4 (Bit Score: 297; Significance: 1e-167; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 31 - 335
Target Start/End: Original strand, 35364855 - 35365159
Alignment:
| Q |
31 |
ctaagtatccaccttgaccaataatagcaatttacacaactttaacagtagtatgcatattaggaatattctctaataaatcaatggttaacattgatgc |
130 |
Q |
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| T |
35364855 |
ctaagtatccaccttgaccaataatagcaatttacacaactttaacagtagtatgcatattcggaatattctctaataaatcaatggttaacattgatgc |
35364954 |
T |
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| Q |
131 |
ctttggcttctgctttggattaatattcctctcagaatatcccaatgaaagtgaatttgttgaagtgttccttttaaatggacctaaccatttagcttgc |
230 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35364955 |
ctttggcttctgctttggattaatattcctctcagaatatcccaatgaaagtgaatttgttgaagtgttccttttaaatggacctaaccatttagcttgc |
35365054 |
T |
|
| Q |
231 |
atgtatttatgttttctccatggtcccatgtgcattttgttttccttcaaacaccttttagctgccatacacataatcttgattatgttacttaatctct |
330 |
Q |
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| T |
35365055 |
atgtatttatgttttctccatggtcccatatgcattttgttttccttcaaacaccttttagctgccatacacataatcttgattatgttacttaatctct |
35365154 |
T |
|
| Q |
331 |
ctgct |
335 |
Q |
| |
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||||| |
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| T |
35365155 |
ctgct |
35365159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 83 - 335
Target Start/End: Original strand, 35373023 - 35373275
Alignment:
| Q |
83 |
atgcatattaggaatattctctaataaatcaatggttaacattgatgcctttggcttctgctttggattaatattcctctcagaatatcccaatgaaagt |
182 |
Q |
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| T |
35373023 |
atgcatatcaggaaacttctctagcaaatccactgttaacattgatgcctttggcttctgctttggattaatattcctctcagaatatcccaatgaaagt |
35373122 |
T |
|
| Q |
183 |
gaatttgttgaagtgttccttttaaatggacctaaccatttagcttgcatgtatttatgttttctccatggtcccatgtgcattttgttttccttcaaac |
282 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35373123 |
gaatttgttgaagtgttccttttaaatggacctaaccatttagcttgcatgtatttatgttttctccatggtcccatgtgcattttgttttccttcaaac |
35373222 |
T |
|
| Q |
283 |
accttttagctgccatacacataatcttgattatgttacttaatctctctgct |
335 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35373223 |
accttttagctgccatacacataatcttgattatgttacttaatctctctgct |
35373275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 70; Significance: 2e-31; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 99 - 279
Target Start/End: Complemental strand, 3776391 - 3776214
Alignment:
| Q |
99 |
ttctctaataaatcaatggttaacattgatgcctttggcttctgctttggattaatattcctctcagaatatcccaatgaaagtgaatttgttgaagtgt |
198 |
Q |
| |
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||||||||||||||||| || ||||| |||||||||| || |||||| ||| ||| ||||||||||| ||||| || ||| | | |||||||||||| |
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| T |
3776391 |
ttctctaataaatcaatagtcaacatagatgcctttgattttggctttg--ttattat-cctctcagaatttcccattggaagaggagttgttgaagtgt |
3776295 |
T |
|
| Q |
199 |
tccttttaaatggacctaaccatttagcttgcatgtatttatgttttctccatggtcccatgtgcattttgttttccttca |
279 |
Q |
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|||||| | |||||||||||||||||||||||||||| |||| || |||||||| |||||||||||||| || ||||||| |
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| T |
3776294 |
tcctttcacatggacctaaccatttagcttgcatgtacctatgcttcctccatggccccatgtgcatttttttatccttca |
3776214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 186 - 264
Target Start/End: Complemental strand, 3808013 - 3807935
Alignment:
| Q |
186 |
tttgttgaagtgttccttttaaatggacctaaccatttagcttgcatgtatttatgttttctccatggtcccatgtgca |
264 |
Q |
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|||||||||| || ||||| | ||||||||||||||||||||| |||||| ||||| | |||||||| ||||| |||| |
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| T |
3808013 |
tttgttgaagggtacctttcacatggacctaaccatttagcttccatgtacttatgcctcctccatggccccatatgca |
3807935 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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