View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1715_high_96 (Length: 336)

Name: NF1715_high_96
Description: NF1715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1715_high_96
NF1715_high_96
[»] chr7 (11 HSPs)
chr7 (18-331)||(39538061-39538374)
chr7 (43-321)||(39547529-39547807)
chr7 (56-321)||(39365880-39366145)
chr7 (43-321)||(39338514-39338792)
chr7 (56-331)||(39564298-39564576)
chr7 (45-331)||(39353359-39353645)
chr7 (91-321)||(39589357-39589587)
chr7 (96-321)||(39575119-39575344)
chr7 (110-331)||(39622115-39622336)
chr7 (176-321)||(1084865-1085011)
chr7 (171-233)||(1085062-1085123)
[»] chr2 (3 HSPs)
chr2 (107-318)||(44223209-44223420)
chr2 (179-318)||(44234031-44234170)
chr2 (131-318)||(44211047-44211234)
[»] chr4 (2 HSPs)
chr4 (134-315)||(2877138-2877319)
chr4 (204-321)||(2886975-2887092)
[»] chr1 (1 HSPs)
chr1 (212-264)||(2160956-2161008)


Alignment Details
Target: chr7 (Bit Score: 282; Significance: 1e-158; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 18 - 331
Target Start/End: Complemental strand, 39538374 - 39538061
Alignment:
18 ttgtgaagtaaagaactaaagattgttaaatgcttgggctgaacttgcaggaaatgagaacccgaggtgttgttgagaataagttggttcttttgaaagg 117  Q
    ||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
39538374 ttgtgaagtaaagaactaaagattgttaaatccttggactgaacttgcaggaaatgagaacccgaggtgttgttgagaatatgttggttcttttgaaagg 39538275  T
118 tctcagtggagctttcagaccaggtgttctcactgctctgatgggcgtcacgggtgcaggcaaaacaactctgatggatgtgctttctggtagaaaaact 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
39538274 tctcagtggagctttcagaccaggtgttctcactgctctgatgggcgtcacgggtgcaggcaaaacaactctgatggatgtgctttctggtagaaaaact 39538175  T
218 ggtggatatattggtgggaacatcacaatttctggctatccaaagaagcaagatacctttgcaagaatttctgggtactgtgagcaaaatgatatccatt 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| |||||||||||    
39538174 ggtggatatattggtgggaacatcacaatttctggctatccaaagaagcaagatacctttgcaagaatttcaggatactgtgagcaaactgatatccatt 39538075  T
318 ctccctatgctact 331  Q
    |||| |||| ||||    
39538074 ctccttatgttact 39538061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 43 - 321
Target Start/End: Complemental strand, 39547807 - 39547529
Alignment:
43 ttaaatgcttgggctgaacttgcaggaaatgagaacccgaggtgttgttgagaataagttggttcttttgaaaggtctcagtggagctttcagaccaggt 142  Q
    |||||| ||||  ||||||| |||||||||| ||| |||||||||||||||| ||||||||||||||||||| ||| | ||||||||||||||||| |||    
39547807 ttaaatacttgaactgaactcgcaggaaatgcgaaaccgaggtgttgttgaggataagttggttcttttgaagggtgtaagtggagctttcagacctggt 39547708  T
143 gttctcactgctctgatgggcgtcacgggtgcaggcaaaacaactctgatggatgtgctttctggtagaaaaactggtggatatattggtgggaacatca 242  Q
    |||||||||||||||||||| || || ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
39547707 gttctcactgctctgatgggtgtgactggtgcaggcaaaacaactctgatggatgtactttctggtagaaaaactggtggatatattggtgggaacatca 39547608  T
243 caatttctggctatccaaagaagcaagatacctttgcaagaatttctgggtactgtgagcaaaatgatatccattctcc 321  Q
    |||| ||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| |||||||||||||||    
39547607 caatatctggctatccaaagaagcaagatacctttgcaagaatttcaggatactgtgagcaaactgatatccattctcc 39547529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 56 - 321
Target Start/End: Original strand, 39365880 - 39366145
Alignment:
56 ctgaacttgcaggaaatgagaacccgaggtgttgttgagaataagttggttcttttgaaaggtctcagtggagctttcagaccaggtgttctcactgctc 155  Q
    ||||| || ||||||||||||| |||||||||| ||||| ||||||| |||||| |||| ||||| ||||||||||||||||||||||||||||| ||||    
39365880 ctgaaattacaggaaatgagaaaccgaggtgttattgaggataagttagttcttctgaagggtcttagtggagctttcagaccaggtgttctcacggctc 39365979  T
156 tgatgggcgtcacgggtgcaggcaaaacaactctgatggatgtgctttctggtagaaaaactggtggatatattggtgggaacatcacaatttctggcta 255  Q
    ||||||| || || ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
39365980 tgatgggtgtgaccggtgctggcaaaacaactctgatggatgtgctttctggtagaaaaactggtggatatattggtgggaacatcacaatatctggcta 39366079  T
256 tccaaagaagcaagatacctttgcaagaatttctgggtactgtgagcaaaatgatatccattctcc 321  Q
    ||||||||||||||| |||||||||||||||||||| ||||| ||||||| |||||||||||||||    
39366080 tccaaagaagcaagaaacctttgcaagaatttctggatactgcgagcaaactgatatccattctcc 39366145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 43 - 321
Target Start/End: Original strand, 39338514 - 39338792
Alignment:
43 ttaaatgcttgggctgaacttgcaggaaatgagaacccgaggtgttgttgagaataagttggttcttttgaaaggtctcagtggagctttcagaccaggt 142  Q
    |||||| ||||| ||| | |||||||||||||||| | |||||||| ||||| ||||||| ||||||||||| ||| | |||||||||||||||||||||    
39338514 ttaaatacttggactggatttgcaggaaatgagaaacagaggtgttcttgaggataagttagttcttttgaagggtgtaagtggagctttcagaccaggt 39338613  T
143 gttctcactgctctgatgggcgtcacgggtgcaggcaaaacaactctgatggatgtgctttctggtagaaaaactggtggatatattggtgggaacatca 242  Q
    |||||||| |||||||||||| |||| ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
39338614 gttctcaccgctctgatgggcatcaccggtgctgggaaaacaactctgatggatgtgctttctggtagaaaaactggtggatatattggtgggaacatca 39338713  T
243 caatttctggctatccaaagaagcaagatacctttgcaagaatttctgggtactgtgagcaaaatgatatccattctcc 321  Q
     |||||| |||| ||||||||||||||| |||||||||||||||||||| ||||||||||||| |||||||||||||||    
39338714 aaatttccggctttccaaagaagcaagaaacctttgcaagaatttctggatactgtgagcaaactgatatccattctcc 39338792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 181; E-Value: 9e-98
Query Start/End: Original strand, 56 - 331
Target Start/End: Complemental strand, 39564576 - 39564298
Alignment:
56 ctgaacttgcaggaaatg---agaacccgaggtgttgttgagaataagttggttcttttgaaaggtctcagtggagctttcagaccaggtgttctcactg 152  Q
    ||||||||||||||||||   |||| || ||||||||||||| ||||||||||||||||||| ||| | ||||||||||||||||| |||||||||||||    
39564576 ctgaacttgcaggaaatgcgaagaaacctaggtgttgttgaggataagttggttcttttgaagggtgtaagtggagctttcagacctggtgttctcactg 39564477  T
153 ctctgatgggcgtcacgggtgcaggcaaaacaactctgatggatgtgctttctggtagaaaaactggtggatatattggtgggaacatcacaatttctgg 252  Q
    |||| ||||| || || ||||| ||||||||||||||||||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||| ||    
39564476 ctctaatgggtgtgaccggtgctggcaaaacaactctgatggatgtgctttctggtaggaaaaccggaggatatattggtgggaacatcacaatttccgg 39564377  T
253 ctatccaaagaagcaagatacctttgcaagaatttctgggtactgtgagcaaaatgatatccattctccctatgctact 331  Q
    || ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| |||| ||||    
39564376 ctttccaaagaagcaagaaacctttgcaagaatttctgggtactgtgagcaaaatgatatccactctccttatgttact 39564298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 171; E-Value: 8e-92
Query Start/End: Original strand, 45 - 331
Target Start/End: Original strand, 39353359 - 39353645
Alignment:
45 aaatgcttgggctgaacttgcaggaaatgagaacccgaggtgttgttgagaataagttggttcttttgaaaggtctcagtggagctttcagaccaggtgt 144  Q
    |||| ||||| ||| | ||||||||||||| || |||||| ||| ||||  ||||||| |||||||| || ||| | |||||||||||||||||||||||    
39353359 aaatacttggactggatttgcaggaaatgaaaaaccgaggcgttcttgaagataagttagttcttttaaagggtgtaagtggagctttcagaccaggtgt 39353458  T
145 tctcactgctctgatgggcgtcacgggtgcaggcaaaacaactctgatggatgtgctttctggtagaaaaactggtggatatattggtgggaacatcaca 244  Q
    |||||| |||||||||||| |||| ||||| || ||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||    
39353459 tctcacggctctgatgggcatcactggtgctggaaaaacaactctaatggatgtgctttctggtagaaaaaccggtggatatattggtgggaacatcaca 39353558  T
245 atttctggctatccaaagaagcaagatacctttgcaagaatttctgggtactgtgagcaaaatgatatccattctccctatgctact 331  Q
    ||||| ||||||||||| |||||||| |||||||||||||||||||| ||||||||||||| ||||||||||||||| |||| ||||    
39353559 atttccggctatccaaaaaagcaagaaacctttgcaagaatttctggatactgtgagcaaactgatatccattctccttatgttact 39353645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 91 - 321
Target Start/End: Complemental strand, 39589587 - 39589357
Alignment:
91 tgagaataagttggttcttttgaaaggtctcagtggagctttcagaccaggtgttctcactgctctgatgggcgtcacgggtgcaggcaaaacaactctg 190  Q
    |||| ||||||||||||||||||||||| ||||||||  ||| || || ||||||||||||||| | ||||||||||||||||| || ||||| ||| ||    
39589587 tgaggataagttggttcttttgaaaggtgtcagtggaatttttaggcctggtgttctcactgctttaatgggcgtcacgggtgctggaaaaactactttg 39589488  T
191 atggatgtgctttctggtagaaaaactggtggatatattggtgggaacatcacaatttctggctatccaaagaagcaagatacctttgcaagaatttctg 290  Q
     ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| ||||||||||| || ||||||||||||||||    
39589487 ttggatgtgctttctggtagaaaaactggtggatatattggtgggaccatcacaatttctggatatcctaagaagcaagaaacatttgcaagaatttctg 39589388  T
291 ggtactgtgagcaaaatgatatccattctcc 321  Q
    | ||||||||||||||||||||||| |||||    
39589387 gatactgtgagcaaaatgatatccactctcc 39589357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 96 - 321
Target Start/End: Complemental strand, 39575344 - 39575119
Alignment:
96 ataagttggttcttttgaaaggtctcagtggagctttcagaccaggtgttctcactgctctgatgggcgtcacgggtgcaggcaaaacaactctgatgga 195  Q
    ||||||||||||||||||| ||| |||| |||||||| || ||||||||||||||||| || ||||| ||||| ||||| |||||||||||| |||||||    
39575344 ataagttggttcttttgaacggtgtcagcggagcttttaggccaggtgttctcactgcacttatgggtgtcactggtgctggcaaaacaactttgatgga 39575245  T
196 tgtgctttctggtagaaaaactggtggatatattggtgggaacatcacaatttctggctatccaaagaagcaagatacctttgcaagaatttctgggtac 295  Q
    ||| ||| ||||||| |||| ||| ||||||||| |||||||||||||| |||| ||  |||| || |||||||| ||||||||||||||||| || |||    
39575244 tgtacttgctggtaggaaaagtgggggatatattagtgggaacatcacagtttccgggcatcccaaaaagcaagaaacctttgcaagaatttccggatac 39575145  T
296 tgtgagcaaaatgatatccattctcc 321  Q
    ||||||||||||||||| || |||||    
39575144 tgtgagcaaaatgatatacactctcc 39575119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 110 - 331
Target Start/End: Complemental strand, 39622336 - 39622115
Alignment:
110 ttgaaaggtctcagtggagctttcagaccaggtgttctcactgctctgatgggcgtcacgggtgcaggcaaaacaactctgatggatgtgctttctggta 209  Q
    ||||| ||| |||||||  | |||||||| | ||||||||| ||||||||||| || || ||||| ||||||||||||||||||||||| ||  |||| |    
39622336 ttgaatggtgtcagtggttcattcagaccggctgttctcacagctctgatgggtgtgactggtgctggcaaaacaactctgatggatgtactagctggaa 39622237  T
210 gaaaaactggtggatatattggtgggaacatcacaatttctggctatccaaagaagcaagatacctttgcaagaatttctgggtactgtgagcaaaatga 309  Q
    |||||||  | |||||||||||||||| ||||||||||||||||||| |||||||||| || |||||||||||| ||| ||| |||||||| |||||| |    
39622236 gaaaaaccagaggatatattggtgggaccatcacaatttctggctattcaaagaagcaggaaacctttgcaagagtttgtggatactgtgaacaaaatta 39622137  T
310 tatccattctccctatgctact 331  Q
    |||||||||||| |||| ||||    
39622136 tatccattctccttatgttact 39622115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 176 - 321
Target Start/End: Complemental strand, 1085011 - 1084865
Alignment:
176 ggcaaaacaactctgatggatgtgctttctggtagaaaaactggtggatatattggtgggaacatcacaatttctggctatccaaag--aagcaagatac 273  Q
    |||||||||||| |||||||||||||| ||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| ||  |||||||| ||    
1085011 ggcaaaacaactttgatggatgtgctt-ctggtagaaaaactgatggatatattggtgggaacatcataatttctggctatccatagaaaagcaagaaac 1084913  T
274 ctttgcaagaatttctgggtactgtgagcaaaatgatatccattctcc 321  Q
     ||| ||||||||||||| |||||||||||||  ||||||||||||||    
1084912 atttacaagaatttctggatactgtgagcaaatagatatccattctcc 1084865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 171 - 233
Target Start/End: Complemental strand, 1085123 - 1085062
Alignment:
171 gtgcaggcaaaacaactctgatggatgtgctttctggtagaaaaactggtggatatattggtg 233  Q
    |||| |||||||||||| |||||||||||||| ||||||||||||||| |||||| |||||||    
1085123 gtgctggcaaaacaactttgatggatgtgctt-ctggtagaaaaactgatggatacattggtg 1085062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 68; Significance: 2e-30; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 107 - 318
Target Start/End: Complemental strand, 44223420 - 44223209
Alignment:
107 cttttgaaaggtctcagtggagctttcagaccaggtgttctcactgctctgatgggcgtcacgggtgcaggcaaaacaactctgatggatgtgctttctg 206  Q
    |||||||| ||| | ||||| || ||||| || ||||||||||| ||| ||||||| || |  || || || |||||||||||||||||||| ||  |||    
44223420 cttttgaagggtgttagtggtgcattcaggcccggtgttctcacagctttgatgggtgtaagtggagctggtaaaacaactctgatggatgttctggctg 44223321  T
207 gtagaaaaactggtggatatattggtgggaacatcacaatttctggctatccaaagaagcaagatacctttgcaagaatttctgggtactgtgagcaaaa 306  Q
    |||| ||||| ||||||||||||| |||  ||||||   ||||||| || || || |||||||| || ||||| ||||||||||| ||||||||||| ||    
44223320 gtaggaaaacaggtggatatattgatggagacatcaaggtttctgggtaccctaaaaagcaagaaacatttgctagaatttctggctactgtgagcagaa 44223221  T
307 tgatatccattc 318  Q
    ||||||||||||    
44223220 tgatatccattc 44223209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 179 - 318
Target Start/End: Complemental strand, 44234170 - 44234031
Alignment:
179 aaaacaactctgatggatgtgctttctggtagaaaaactggtggatatattggtgggaacatcacaatttctggctatccaaagaagcaagatacctttg 278  Q
    |||||||||||||||||||| ||  ||||||| ||||| ||||||||||||| |||  ||||||   ||||||| ||||| || |||||||| || ||||    
44234170 aaaacaactctgatggatgttctggctggtaggaaaacaggtggatatattgatggagacatcaaggtttctgggtatcctaaaaagcaagaaacatttg 44234071  T
279 caagaatttctgggtactgtgagcaaaatgatatccattc 318  Q
    | ||||| || || ||||||||||| ||||||||||||||    
44234070 ctagaatctccggttactgtgagcagaatgatatccattc 44234031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 131 - 318
Target Start/End: Complemental strand, 44211234 - 44211047
Alignment:
131 ttcagaccaggtgttctcactgctctgatgggcgtcacgggtgcaggcaaaacaactctgatggatgtgctttctggtagaaaaactggtggatatattg 230  Q
    ||||| || ||||||||||| ||| ||||||| || |  || || || |||||||||||||||||||| ||  ||||||| ||||| |||||||||||||    
44211234 ttcaggcccggtgttctcacagctttgatgggtgtaagtggagctggtaaaacaactctgatggatgttctggctggtaggaaaacaggtggatatattg 44211135  T
231 gtgggaacatcacaatttctggctatccaaagaagcaagatacctttgcaagaatttctgggtactgtgagcaaaatgatatccattc 318  Q
     |||  ||||||   ||||||| || || || |||||||| || ||||| ||||| ||||| |||||||| || |||||||| |||||    
44211134 atggagacatcaaggtttctgggtaccctaaaaagcaagaaacatttgctagaatatctggctactgtgaacagaatgatattcattc 44211047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 134 - 315
Target Start/End: Original strand, 2877138 - 2877319
Alignment:
134 agaccaggtgttctcactgctctgatgggcgtcacgggtgcaggcaaaacaactctgatggatgtgctttctggtagaaaaactggtggatatattggtg 233  Q
    ||||| ||||||||||| ||| ||||||| || |  || || || ||||| ||| ||||||||||  |  ||||||| |||||| |||| ||||||| ||    
2877138 agacctggtgttctcacagctttgatgggtgttagtggagctggtaaaactactttgatggatgtattggctggtaggaaaactagtggttatattgatg 2877237  T
234 ggaacatcacaatttctggctatccaaagaagcaagatacctttgcaagaatttctgggtactgtgagcaaaatgatatcca 315  Q
    ||| ||| | ||||||||| || || || |||||||| || ||||| ||||| ||||| || |||||||| |||||||||||    
2877238 ggagcataaaaatttctggttaccctaaaaagcaagaaacatttgctagaatctctggctattgtgagcagaatgatatcca 2877319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 204 - 321
Target Start/End: Original strand, 2886975 - 2887092
Alignment:
204 ctggtagaaaaactggtggatatattggtgggaacatcacaatttctggctatccaaagaagcaagatacctttgcaagaatttctgggtactgtgagca 303  Q
    ||||||| ||||||||||| |||||||  |||| ||| | ||||||||| || || || || ||||| || |||||  |||| ||||| || ||||||||    
2886975 ctggtaggaaaactggtggttatattgacgggagcataaaaatttctgggtaccctaaaaaacaagaaacgtttgctcgaatctctggttattgtgagca 2887074  T
304 aaatgatatccattctcc 321  Q
     |||||||||||||||||    
2887075 gaatgatatccattctcc 2887092  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 212 - 264
Target Start/End: Complemental strand, 2161008 - 2160956
Alignment:
212 aaaactggtggatatattggtgggaacatcacaatttctggctatccaaagaa 264  Q
    ||||||||||||||||||| ||| ||||||||||| || ||||||||||||||    
2161008 aaaactggtggatatattgatggaaacatcacaatatccggctatccaaagaa 2160956  T

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