View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1715_high_97 (Length: 334)
Name: NF1715_high_97
Description: NF1715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1715_high_97 |
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Alignment Details
Target: chr1 (Bit Score: 281; Significance: 1e-157; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 1 - 316
Target Start/End: Original strand, 43561178 - 43561494
Alignment:
| Q |
1 |
tccaatcaattgtaaa-tctcaaatgctagactttcatcaacaaccgagaatggagtgttgtgcgctaatagctccaacaatttataaagataccagtat |
99 |
Q |
| |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
43561178 |
tccaatcaattgtaaaatctcaaatgctagactttcatcaacaaccgagaatggagtgttgtgagctaatagctccaacaatttataaagataccagtat |
43561277 |
T |
|
| Q |
100 |
gcacaaaagcggaagaaacgggttaaacaatcattttgcaagacaaatccacaacgaagacgcctcttgtgatagtctatcgaaatgaaatttgcaatgt |
199 |
Q |
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|||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| || |||||||||| ||||||||||||||||||||||| |
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| T |
43561278 |
gcacaaaagcagaagaaatgggttaaacaatcattttgcaagacaaatccacaacgaagacgtctgttgtgatagtttatcgaaatgaaatttgcaatgt |
43561377 |
T |
|
| Q |
200 |
tcattgcctgttcaaccgtaaatccaagcaaatcaatcccattttcatacatgtggcgttcaagattggaggagaagttgaaagccattgattgaaattg |
299 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43561378 |
tcactgcctgttcaaccgtaaatccaagcaaatcaatcccattttcatacatgtggcgttcaagattggaggagaagttgaaagccattgattgaaattg |
43561477 |
T |
|
| Q |
300 |
aaatttgtgggtgttgc |
316 |
Q |
| |
|
||||||||||||||||| |
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| T |
43561478 |
aaatttgtgggtgttgc |
43561494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 303
Target Start/End: Complemental strand, 17729982 - 17729679
Alignment:
| Q |
1 |
tccaatcaattgtaaa-tctcaaatgctagactttcatcaacaaccgagaatggagtgttgtgcgctaatagctccaacaatttataaagataccagtat |
99 |
Q |
| |
|
|||||||||||||||| ||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||||| |||||||||||||||||||||| |
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| T |
17729982 |
tccaatcaattgtaaaatctcaaatgctaggctttcatcaacaaccgagaatggagtattgtgagctaatagctccagcaatttataaagataccagtat |
17729883 |
T |
|
| Q |
100 |
gcacaaaagcggaagaaacgggttaaacaatcattttgcaagacaaatccacaacgaagacgcctcttgtgatagtctatcgaaatgaaatttgcaatgt |
199 |
Q |
| |
|
|||||||| | ||||||||||||||||||||||||| |||| |||||||||||||||| |||||| |||||||||||||||||||||||||| ||||||| |
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|
| T |
17729882 |
gcacaaaaacagaagaaacgggttaaacaatcatttcgcaaaacaaatccacaacgaaaacgcctgttgtgatagtctatcgaaatgaaattggcaatgt |
17729783 |
T |
|
| Q |
200 |
tcattgcctgttcaaccgtaaatccaagcaaatcaatcccattttcatacatgtggcgttcaagattggaggagaagttgaaagccattgattgaaattg |
299 |
Q |
| |
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||||||| ||||||||| |||| |||||||||||||| | |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17729782 |
tcattgcttgttcaaccttaaacccaagcaaatcaattctgttttcatacatgtgacgttcaagattggaggagaagttgaaagccattgattgaaattg |
17729683 |
T |
|
| Q |
300 |
aaat |
303 |
Q |
| |
|
|||| |
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|
| T |
17729682 |
aaat |
17729679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 161; Significance: 8e-86; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 161; E-Value: 8e-86
Query Start/End: Original strand, 1 - 292
Target Start/End: Original strand, 1601849 - 1602139
Alignment:
| Q |
1 |
tccaatcaattgtaaa-tctcaaatgctagactttcatcaacaaccgagaatggagtgttgtgcgctaatagctccaacaatttataaagataccagtat |
99 |
Q |
| |
|
|||||||||||||||| ||||||| |||||| ||||| |||||||||||||||||| | ||| ||||||||||| | |||||||||||||||||| ||| |
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|
| T |
1601849 |
tccaatcaattgtaaaatctcaaacgctagattttcaataacaaccgagaatggagtatcgtgagctaatagctcaagcaatttataaagataccaatat |
1601948 |
T |
|
| Q |
100 |
gcacaaaagcggaagaaacgggttaaacaatcattttgcaagacaaatccacaacgaagacgcctcttgtgatagtctatcgaaatgaaatttgcaatgt |
199 |
Q |
| |
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||| |||| || ||||||| ||||| |||||||||| | ||||||||||||| ||||| |||| | |||||||||||||||||||||||| ||||||| |
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|
| T |
1601949 |
gcagaaaatcg-aagaaacaagttaagtaatcattttgta-gacaaatccacaatgaagatgcctgtcgtgatagtctatcgaaatgaaattggcaatgt |
1602046 |
T |
|
| Q |
200 |
tcattgcctgttcaaccgtaaatccaagcaaatcaatcccattttcatacatgtggcgttcaagattggaggagaagttgaaagccattgatt |
292 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||| |||||||| || |||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1602047 |
tcattgtctgttcaaccgtaaatccaagcaaatcaatcctattttcatgtatttggcgttcaagattggaggagaagttgaaagccattgatt |
1602139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 1 - 292
Target Start/End: Original strand, 1622303 - 1622593
Alignment:
| Q |
1 |
tccaatcaattgtaaa-tctcaaatgctagactttcatcaacaaccgagaatggagtgttgtgcgctaatagctccaacaatttataaagataccagtat |
99 |
Q |
| |
|
|||||||||||||||| ||||||| |||||| ||||| |||| ||||||||||||| ||||| ||||||| | ||||||||||||||||||||| ||| |
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| T |
1622303 |
tccaatcaattgtaaaatctcaaacgctagattttcaataacatccgagaatggagtattgtgagctaataattgcaacaatttataaagataccaatat |
1622402 |
T |
|
| Q |
100 |
gcacaaaagcggaagaaacgggttaaacaatcattttgcaagacaaatccacaacgaagacgcctcttgtgatagtctatcgaaatgaaatttgcaatgt |
199 |
Q |
| |
|
||| |||| || |||||||||||||| |||||||||| | |||||||||||||||||||||| | | |||||||||||||||||||||||| ||||||| |
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|
| T |
1622403 |
gcaaaaaatcg-aagaaacgggttaagtaatcattttgta-gacaaatccacaacgaagacgcttgtcgtgatagtctatcgaaatgaaattggcaatgt |
1622500 |
T |
|
| Q |
200 |
tcattgcctgttcaaccgtaaatccaagcaaatcaatcccattttcatacatgtggcgttcaagattggaggagaagttgaaagccattgatt |
292 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||| || |||| || |||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1622501 |
tcattgtctgttcaaccgtaaatccaagcaaatcaattatgttctcatgtatttggcgttcaagattggaggagaagttgaaagccattgatt |
1622593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 49 - 312
Target Start/End: Complemental strand, 1601281 - 1601018
Alignment:
| Q |
49 |
aatggagtgttgtgcgctaatagctccaacaatttataaagataccagtatgcacaaaagcggaagaaacgggttaaacaatcattttgcaagacaaatc |
148 |
Q |
| |
|
|||||||| | ||| ||||||||||||| |||||||| ||||||| ||||||| |||| | ||||||||||||||||||||||||| |||||||||||| |
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|
| T |
1601281 |
aatggagtatcgtgagctaatagctccagaaatttatagagatacctgtatgcagaaaaacagaagaaacgggttaaacaatcatttcgcaagacaaatc |
1601182 |
T |
|
| Q |
149 |
cacaacgaagacgcctcttgtgatagtctatcgaaatgaaatttgcaatgttcattgcctgttcaaccgtaaatccaagcaaatcaatcccattttcata |
248 |
Q |
| |
|
||||| ||| |||| | |||| ||| ||| ||||||||||||| ||||| | ||||| |||||||||| |||| |||||||||||||| || |||||||| |
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|
| T |
1601181 |
cacaatgaatacgcatgttgtaatattctttcgaaatgaaattggcaatatgcattgtctgttcaaccataaa-ccaagcaaatcaattccgttttcata |
1601083 |
T |
|
| Q |
249 |
catgtggcgttcaagattggaggagaagttgaaagccattga-ttgaaattgaaatttgtgggtg |
312 |
Q |
| |
|
||| |||| ||||| ||||||||| || |||||| ||||||| |||||| ||||| ||| ||||| |
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|
| T |
1601082 |
catatggcattcaaaattggaggataatttgaaaaccattgatttgaaaatgaaaattgagggtg |
1601018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 119 - 312
Target Start/End: Complemental strand, 1621694 - 1621501
Alignment:
| Q |
119 |
gggttaaacaatcattttgcaagacaaatccacaacgaagacgcctcttgtgatagtctatcgaaatgaaatttgcaatgttcattgcctgttcaaccgt |
218 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||| |||||||| | |||| ||| ||| || |||||||||| ||||| |||||||| ||||||||||| |
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|
| T |
1621694 |
gggttaaacaatcattccgcaagacaaatccacaatgaagacgcatgttgtaatattctttcaaaatgaaattggcaatattcattgcttgttcaaccgt |
1621595 |
T |
|
| Q |
219 |
aaatccaagcaaatcaatcccattttcatacatgtggcgttcaagattggaggagaagttgaaagccattga-ttgaaattgaaatttgtgggtg |
312 |
Q |
| |
|
||| |||||||||||||| || ||||||||||| |||| ||||| ||||||||| ||||||||| ||||| | |||||| ||||| ||| ||||| |
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|
| T |
1621594 |
aaa-ccaagcaaatcaattccgttttcatacatatggcattcaaaattggaggataagttgaaaaccatttatttgaaaatgaaaattgagggtg |
1621501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 66; Significance: 4e-29; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 66 - 292
Target Start/End: Complemental strand, 29543508 - 29543279
Alignment:
| Q |
66 |
taatagctccaacaatttataaagataccagtatgcacaaaagcggaagaaacgggttaaacaatcattttgcaagacaaatccacaacgaagacgc--- |
162 |
Q |
| |
|
|||||| |||||||||||| |||||||||| |||| | || | |||| ||| |||||||||||||| |||||| | ||||||||| |||||| |
|
|
| T |
29543508 |
taatagttccaacaatttacaaagataccaatatgttgagaaacagaagcaacatgttaaacaatcattc-gcaagatatatccacaacaaagacgtacg |
29543410 |
T |
|
| Q |
163 |
-ctcttgtgatagtctatcgaaatgaaatttgcaatgttcattgcctgttcaaccgtaaatccaagcaaatcaatcccattttcatacatgtggcgttca |
261 |
Q |
| |
|
|| || ||||||| ||| || |||||||| |||||||||||||| |||||||||| || | ||||||||||| | ||||||||||| |||| |||| |
|
|
| T |
29543409 |
tctattatgatagtatatagagatgaaattggcaatgttcattgcttgttcaaccgcgaaacgtagcaaatcaattctgttttcatacatctggcattca |
29543310 |
T |
|
| Q |
262 |
agattggaggagaagttgaaagccattgatt |
292 |
Q |
| |
|
|| |||||||||||||||||||||||||||| |
|
|
| T |
29543309 |
agtttggaggagaagttgaaagccattgatt |
29543279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 14 - 215
Target Start/End: Original strand, 29543765 - 29543964
Alignment:
| Q |
14 |
aaatctcaaatgctagactttcatcaacaaccgagaatggagtgttgtgcgctaatagctccaacaatttataaagataccagtatgcacaaaagcggaa |
113 |
Q |
| |
|
|||||||||| | |||| ||||||||||||| |||||||||| || || | |||||||||| |||||||| ||| || | ||||| | || | || |
|
|
| T |
29543765 |
aaatctcaaaagatagattttcatcaacaacatagaatggagtattatgaggtaatagctcctacaattta--aaggtaataatatgctgacaaactaaa |
29543862 |
T |
|
| Q |
114 |
gaaacgggttaaacaatcattttgcaagacaaatccacaacgaagacgcctcttgtgatagtctatcgaaatgaaatttgcaatgttcattgcctgttca |
213 |
Q |
| |
|
|||| |||||||||||||| ||||||||||||||||||||||||| | |||||| ||| | | | ||||| || | |||||||||| |||||||| |
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|
| T |
29543863 |
gaaatatgttaaacaatcattccacaagacaaatccacaacgaagacgcatgttgtgagagtatgtgaagatgaagttggaaatgttcattacctgttca |
29543962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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