View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1715_low_101 (Length: 333)
Name: NF1715_low_101
Description: NF1715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1715_low_101 |
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| [»] scaffold1543 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 288; Significance: 1e-161; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 18 - 321
Target Start/End: Original strand, 21590661 - 21590964
Alignment:
| Q |
18 |
gttaagggcacccaacatccacaactggtacatagaattgagaatattatcctgcggaggtggatcaatgaaatcaaagtcgagtaaattttcaacttta |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21590661 |
gttaagggcacccaacatccacaactggtacatagaattaagaatattatcctgcggaggtggatcaatgaaatcaaagtcgagtaaattttcaacttta |
21590760 |
T |
|
| Q |
118 |
agagatttcagcaacaagacgacattgccaaggttagttctttgaatctctggaacaggactgggcaacatttcatttaggtaagcacgctctgtataca |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| |
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| T |
21590761 |
agagatttcagcaacaagacgacattgccaaggttagttctctgaatctctggaacaggactggccaacatttcatttaggtaagcactctctgtataca |
21590860 |
T |
|
| Q |
218 |
accgatagcatgtcccagggccagttcgaccagctcgaccagcacgctggttagcagcagcctggctaaccgggaagacttgtagagcgtccatacccat |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21590861 |
accgatagcatgtcccagggccagttcgaccagctcgaccagcacgctggttagcagcagcctggctaaccgggaagacttgtagagcgtccatacccat |
21590960 |
T |
|
| Q |
318 |
ccta |
321 |
Q |
| |
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|||| |
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| T |
21590961 |
ccta |
21590964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 18 - 321
Target Start/End: Original strand, 21624863 - 21625166
Alignment:
| Q |
18 |
gttaagggcacccaacatccacaactggtacatagaattgagaatattatcctgcggaggtggatcaatgaaatcaaagtcgagtaaattttcaacttta |
117 |
Q |
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||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
21624863 |
gttaagggcgcccaacatccacaactggtacatagaattaagaatattatcctgcggaggtggatcaatgaaatcaaagtcaagtaaattttcaacttta |
21624962 |
T |
|
| Q |
118 |
agagatttcagcaacaagacgacattgccaaggttagttctttgaatctctggaacaggactgggcaacatttcatttaggtaagcacgctctgtataca |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| |
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| T |
21624963 |
agagatttcagcaacaagacgacattgccaaggttagttctctgaatctctggaacaggactggccaacatttcatttaggtaagcactctctgtataca |
21625062 |
T |
|
| Q |
218 |
accgatagcatgtcccagggccagttcgaccagctcgaccagcacgctggttagcagcagcctggctaaccgggaagacttgtagagcgtccatacccat |
317 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21625063 |
accgatagcatgccccagggccagttcgaccagctcgaccagcacgctggttagcagcagcctggctaaccgggaagacttgtagagcgtccatacccat |
21625162 |
T |
|
| Q |
318 |
ccta |
321 |
Q |
| |
|
|||| |
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|
| T |
21625163 |
ccta |
21625166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1543 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: scaffold1543
Description:
Target: scaffold1543; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 18 - 321
Target Start/End: Original strand, 622 - 925
Alignment:
| Q |
18 |
gttaagggcacccaacatccacaactggtacatagaattgagaatattatcctgcggaggtggatcaatgaaatcaaagtcgagtaaattttcaacttta |
117 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||| |||||||||||| ||||||||||||| ||||||||||||| ||||||||||||||||||| |
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| T |
622 |
gttaagggcacccaacatcaacaactggtacatagaattaagaatattatcccgcggaggtggatcgatgaaatcaaagttgagtaaattttcaacttta |
721 |
T |
|
| Q |
118 |
agagatttcagcaacaagacgacattgccaaggttagttctttgaatctctggaacaggactgggcaacatttcatttaggtaagcacgctctgtataca |
217 |
Q |
| |
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|||||||||||||||||||| | |||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| |
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| T |
722 |
agagatttcagcaacaagaccagattgccaaggttagttctctgaatctctggaacaggactggccaacatttcatttaggtaagcactctctgtataca |
821 |
T |
|
| Q |
218 |
accgatagcatgtcccagggccagttcgaccagctcgaccagcacgctggttagcagcagcctggctaaccgggaagacttgtagagcgtccatacccat |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
822 |
accgatagcatgtcccagggccagttcgaccagctcgaccagcacgctggttagcagcagcctggctaaacgggaagacttgtagagcgtccatacccat |
921 |
T |
|
| Q |
318 |
ccta |
321 |
Q |
| |
|
|||| |
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|
| T |
922 |
ccta |
925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 18 - 317
Target Start/End: Complemental strand, 42100222 - 42099923
Alignment:
| Q |
18 |
gttaagggcacccaacatccacaactggtacatagaattgagaatattatcctgcggaggtggatcaatgaaatcaaagtcgagtaaattttcaacttta |
117 |
Q |
| |
|
||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
42100222 |
gttaagggcgcccaacacccacaactggtacatagaattgagaatattatcctgcggaggtggatccatgaaatcaaagtcgagtaaattttcaacttta |
42100123 |
T |
|
| Q |
118 |
agagatttcagcaacaagacgacattgccaaggttagttctttgaatctctggaacaggactgggcaacatttcatttaggtaagcacgctctgtataca |
217 |
Q |
| |
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|||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| |
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|
| T |
42100122 |
agagatttcagcaacaagaccacattgccaaggttagttctttggatctctggaacaggactggccaacatttcatttaggtaagcactctctgtataca |
42100023 |
T |
|
| Q |
218 |
accgatagcatgtcccagggccagttcgaccagctcgaccagcacgctggttagcagcagcctggctaaccgggaagacttgtagagcgtccatacccat |
317 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| ||||||||||| ||||||||||||||||| |
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| T |
42100022 |
accgatagcatgtaccagggccagttcgaccagctcgaccagcacgctggtcagcagcagcgcggctaacagggaagacttgaagagcgtccatacccat |
42099923 |
T |
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