View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1715_low_102 (Length: 332)
Name: NF1715_low_102
Description: NF1715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1715_low_102 |
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Alignment Details
Target: chr2 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 1 - 316
Target Start/End: Complemental strand, 40594125 - 40593810
Alignment:
| Q |
1 |
gcaggtatcaaattggtttattaatgctcgagttcgcgtgtggaagcctatggttgaagaagtacacatgcttgacnnnnnnncagcagatgccagtgag |
100 |
Q |
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| T |
40594125 |
gcaggtatcaaattggtttattaatgctcgagttcgcgtgtggaagcctatggttgaagaagtacacatgcttgacaaaaaaacagcagatgccagtgag |
40594026 |
T |
|
| Q |
101 |
aattccagtccaaatgagagaacatatggcacggaagtgggtacatgcagccagcctagaatggataaggcattgaacaagtttgttatgcattcaatac |
200 |
Q |
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|||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40594025 |
aattccagtctaaatgagagaacatatggcaccgaagtgggtacatgcagccagcctagaatggataaggcattgaacaagtttgttatgcattcaatac |
40593926 |
T |
|
| Q |
201 |
ctgaaaaccaaattcaatgtatagatacaaatgcggaggaaaatgagttaaatgaggcagaacaatggagtagagagaagaggtataaattggaatgtgg |
300 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40593925 |
ctgaaaaccaaattcaatgtatagatacaaatgcagaggaaaatgagttaaatgaggcagaacaatggagtagagagaagaggtataaattggaatgtgg |
40593826 |
T |
|
| Q |
301 |
aatgagttcaagaatg |
316 |
Q |
| |
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|||||||||||||||| |
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| T |
40593825 |
aatgagttcaagaatg |
40593810 |
T |
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