View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1715_low_103 (Length: 331)
Name: NF1715_low_103
Description: NF1715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1715_low_103 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 17 - 322
Target Start/End: Complemental strand, 40883052 - 40882746
Alignment:
| Q |
17 |
caaagtcccttacatttagaccaatctattgtaattatgatacgagaggccatttacatgcgccttgaaacttaaactatggtcgaaaataaattagaat |
116 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40883052 |
caaagtccctaacatttagaccaatctattgtaattatgatacgagaggccatttacatgcgccttgaaacttaaactatggtcgaaaataaattagaat |
40882953 |
T |
|
| Q |
117 |
gtagaaatcctcacttgagtttgatttaaagcatgtaaaaagggatgttaggcgtaaaggaaatagtgatcccattgtcactagcctcataaaaagtttg |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40882952 |
gtagaaatcctcacttgagtttgatttaaagcatgtaaaaagggttgttaggcgtaaaggaaatagtgatcccattgtcactagcctcataaaaagtttg |
40882853 |
T |
|
| Q |
217 |
----tggtcaaagtcattatcacatgctcgagtacagctacatgctgaaaattttatggataattgagacaaaaaataaatagaggattaaaagagtatt |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40882852 |
tctttggtcaaagtcattatcacatgctcgagta---ttacatgctgaaaattttatggataattgagacaaaaaataaatagaggattaaaagagtatt |
40882756 |
T |
|
| Q |
313 |
actttctctg |
322 |
Q |
| |
|
|||||||||| |
|
|
| T |
40882755 |
actttctctg |
40882746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 138 - 199
Target Start/End: Original strand, 31023766 - 31023827
Alignment:
| Q |
138 |
tgatttaaagcatgtaaaaagggatgttaggcgtaaaggaaatagtgatcccattgtcacta |
199 |
Q |
| |
|
|||||| | ||||||||||| |||| |||||| || |||||||||| || |||||||||||| |
|
|
| T |
31023766 |
tgattttaggcatgtaaaaaaggatcttaggcatagaggaaatagtaattccattgtcacta |
31023827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University