View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1715_low_104 (Length: 329)
Name: NF1715_low_104
Description: NF1715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1715_low_104 |
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Alignment Details
Target: chr5 (Bit Score: 178; Significance: 5e-96; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 13 - 215
Target Start/End: Original strand, 10102427 - 10102629
Alignment:
| Q |
13 |
aatatgaattatacaatgaattgtactatgttctttnnnnnnngttaaactgatcaccttcttgtgcaatgaagagtactatctcgtttcatatttcatt |
112 |
Q |
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| T |
10102427 |
aatatgaattatacaatgaattgtactatgttctttaaaaaaagttaaactgatcaccttcttgtgcaatgaagagtactatctcgtttcatatttcatt |
10102526 |
T |
|
| Q |
113 |
ggtattttttaatgacgcctaataactatttatactttatagtgcatgcataacatgttgaccaacgtcatttgtaaacgaatgttgcaggtcactgagt |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
10102527 |
ggtattttttaatgacgcctaataactatttatactttatagtgcatgcataacatgttgaccaacgtcatttgtaaacgaatgttgcaggtgactgagt |
10102626 |
T |
|
| Q |
213 |
tgt |
215 |
Q |
| |
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||| |
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|
| T |
10102627 |
tgt |
10102629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 179 - 311
Target Start/End: Original strand, 10105353 - 10105484
Alignment:
| Q |
179 |
gtcatttgtaaacgaatgttgcaggtcactgagttgtataaaggtgtcagatcagcttatcttggatccatccttcgtaattccattaacacaatctttg |
278 |
Q |
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||||||| |||| ||||||||||||| |||||||||| || ||||||||||||||||||||| |||||| ||||||||||| |||| ||||||||||||| |
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| T |
10105353 |
gtcatttttaaatgaatgttgcaggtgactgagttgtgtacaggtgtcagatcagcttatct-ggatccttccttcgtaataccatcaacacaatctttg |
10105451 |
T |
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| Q |
279 |
tctaaaggagtaactaggagttttatagttatt |
311 |
Q |
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||| |||||||||| ||||||||| |||||||| |
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| T |
10105452 |
tctgaaggagtaaccaggagttttgtagttatt |
10105484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 179 - 311
Target Start/End: Complemental strand, 10212922 - 10212794
Alignment:
| Q |
179 |
gtcatttgtaaacgaatgttgcaggtcactgagttgtataaaggtgtcagatcagcttatcttggatccatccttcgtaattccattaacacaatctttg |
278 |
Q |
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||||||| |||||||||||||||||| ||||||||| ||||||||| |||||||||||| ||||||||||| |||||||||| ||||||||||||| |
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| T |
10212922 |
gtcatttttaaacgaatgttgcaggtgactgagttgcgtaaaggtgttagatcagcttat----gatccatcctttgtaattccatcaacacaatctttg |
10212827 |
T |
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| Q |
279 |
tctaaaggagtaactaggagttttatagttatt |
311 |
Q |
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| |||||||||||||||||||||| |||||||| |
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| T |
10212826 |
tttaaaggagtaactaggagttttgtagttatt |
10212794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 13 - 127
Target Start/End: Complemental strand, 10213726 - 10213613
Alignment:
| Q |
13 |
aatatgaattatacaatgaattgtactatgttctttnnnnnnngttaaactgatcaccttcttgtgcaatgaagagtactatctcgtttcatatttcatt |
112 |
Q |
| |
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|||||||||||||| ||||| ||||||||||||||| |||||| ||||||||||||| ||||||||||||||||||||||||| |||||||||| |
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| T |
10213726 |
aatatgaattatacgatgaagtgtactatgttctttaaaaaa-gttaaattgatcaccttcttatgcaatgaagagtactatctcgttttatatttcatt |
10213628 |
T |
|
| Q |
113 |
ggtattttttaatga |
127 |
Q |
| |
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||||||||| ||||| |
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| T |
10213627 |
ggtatttttgaatga |
10213613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 179 - 281
Target Start/End: Complemental strand, 9675394 - 9675292
Alignment:
| Q |
179 |
gtcatttgtaaacgaatgttgcaggtcactgagttgtataaaggtgtcagatcagcttatcttggatccatccttcgtaattccattaacacaatctttg |
278 |
Q |
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||||||| ||||| ||||| |||| ||||||||| |||| ||||||| ||||||| ||||| ||||||||||||| |||||||||| |||||| | |||| |
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| T |
9675394 |
gtcatttttaaactaatgtcgcagatcactgagtcgtatgaaggtgttagatcagtttatcctggatccatcctttgtaattccatcaacacagtgtttg |
9675295 |
T |
|
| Q |
279 |
tct |
281 |
Q |
| |
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||| |
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|
| T |
9675294 |
tct |
9675292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 13 - 118
Target Start/End: Complemental strand, 12105822 - 12105718
Alignment:
| Q |
13 |
aatatgaattatacaatgaattgtactatgttctttnnnnnnngttaaactgatcaccttcttgtgcaatgaagagtactatctcgtttcatatttcatt |
112 |
Q |
| |
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|||||||||| ||||||||| ||| ||||| ||||| |||||| ||||||||||||||||||||||||||||||||||| |||||| |||| || |
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| T |
12105822 |
aatatgaattgtacaatgaagtgttctatgctctttgaaaaa-gttaaattgatcaccttcttgtgcaatgaagagtactatctcatttcatctttcgtt |
12105724 |
T |
|
| Q |
113 |
ggtatt |
118 |
Q |
| |
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|||||| |
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|
| T |
12105723 |
ggtatt |
12105718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 68 - 121
Target Start/End: Complemental strand, 9676075 - 9676022
Alignment:
| Q |
68 |
accttcttgtgcaatgaagagtactatctcgtttcatatttcattggtattttt |
121 |
Q |
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|||||||| ||||||||||||||||||||||||| || |||||||||||||||| |
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| T |
9676075 |
accttcttatgcaatgaagagtactatctcgttttatgtttcattggtattttt |
9676022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 64 - 121
Target Start/End: Complemental strand, 9684419 - 9684362
Alignment:
| Q |
64 |
gatcaccttcttgtgcaatgaagagtactatctcgtttcatatttcattggtattttt |
121 |
Q |
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||||||||||| |||||||||||||||||||| |||| || ||||| |||||||||| |
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| T |
9684419 |
gatcaccttctcatgcaatgaagagtactatcttgtttgatttttcaatggtattttt |
9684362 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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