View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1715_low_107 (Length: 327)
Name: NF1715_low_107
Description: NF1715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1715_low_107 |
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Alignment Details
Target: chr5 (Bit Score: 211; Significance: 1e-115; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 10 - 311
Target Start/End: Complemental strand, 39952550 - 39952249
Alignment:
| Q |
10 |
aaatgaagtgattagcgaaattagagcaccaacaaaaccagagttcaatctactcacaccatatccattgacatctgcggaaaggatatacaaaaacaat |
109 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39952550 |
aaatgaagtgattagcgaaattaaagcaccaacaaaaccagagttcaatctactcacaccatatccattgacatctgcggaaaggatatacaaaaacaat |
39952451 |
T |
|
| Q |
110 |
aatcagcaagagttcgagatactactgacctggtataacttgtcaaacatctgcttgaagtacaatgacccattatagtgaaacatcttgatccttcgat |
209 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| || |
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| T |
39952450 |
aatcagcaagagttcgagatactactgacctggtataacttgtcaaacatctgcttgaagtacaatgacccgttatagtgaaacatcttgatccttcaat |
39952351 |
T |
|
| Q |
210 |
ggnnnnnnnnnnnnnnnnnnnnnnnnntgctttcttagtggatgaaattgtatgaccatcagcaaaatattctcccatagcatgttttctgattcatcta |
309 |
Q |
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|| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39952350 |
ggaaaaagagcaaaataaaacgaaaaatgctttcttagtggatgaaattatatgaccatcagcaaaatattctcccatagcatgttttctgattcatcta |
39952251 |
T |
|
| Q |
310 |
tc |
311 |
Q |
| |
|
|| |
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|
| T |
39952250 |
tc |
39952249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 123; Significance: 4e-63; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 94 - 311
Target Start/End: Complemental strand, 30339802 - 30339585
Alignment:
| Q |
94 |
gatatacaaaaacaataatcagcaagagttcgagatactactgacctggtataacttgtcaaacatctgcttgaagtacaatgacccattatagtgaaac |
193 |
Q |
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|
|||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30339802 |
gatatacaaaaacaataatcagcaagagtttgagatactactgacctgttataacttgtcaaacatctgcttgaagtacaatgacccattatagtgaaaa |
30339703 |
T |
|
| Q |
194 |
atcttgatccttcgatggnnnnnnnnnnnnnnnnnnnnnnnnntgctttcttagtggatgaaattgtatgaccatcagcaaaatattctcccatagcatg |
293 |
Q |
| |
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| ||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30339702 |
aacttgatccttcaatggaaaaagaacaaaatcaaatgaaaaatgctttcttagtggatgaaattgtatgaccatcagcaaaatattctcccatagcatg |
30339603 |
T |
|
| Q |
294 |
ttttctgattcatctatc |
311 |
Q |
| |
|
|||||||||||||||||| |
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| T |
30339602 |
ttttctgattcatctatc |
30339585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 114; Significance: 8e-58; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 78 - 211
Target Start/End: Complemental strand, 37222123 - 37221990
Alignment:
| Q |
78 |
tgacatctgcggaaaggatatacaaaaacaataatcagcaagagttcgagatactactgacctggtataacttgtcaaacatctgcttgaagtacaatga |
177 |
Q |
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|
||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37222123 |
tgacatctgcgaaaaggatatacaaaaacaattatcagcaagagttcgagatactactgacctggtataacttgtcaaacatctgcttgaagtacaatga |
37222024 |
T |
|
| Q |
178 |
cccattatagtgaaacatcttgatccttcgatgg |
211 |
Q |
| |
|
||||||||||||||| ||||||||| ||| |||| |
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|
| T |
37222023 |
cccattatagtgaaaaatcttgatctttcaatgg |
37221990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 110; Significance: 2e-55; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 90 - 211
Target Start/End: Original strand, 34230119 - 34230240
Alignment:
| Q |
90 |
aaaggatatacaaaaacaataatcagcaagagttcgagatactactgacctggtataacttgtcaaacatctgcttgaagtacaatgacccattatagtg |
189 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34230119 |
aaaggatgtacaaaaacaataatcagcaagagttcgagatactactgacctggtataacttgtcaaacatctgcttgaagtacaatgacccattatagtg |
34230218 |
T |
|
| Q |
190 |
aaacatcttgatccttcgatgg |
211 |
Q |
| |
|
||| ||||||||||||| |||| |
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| T |
34230219 |
aaaaatcttgatccttcaatgg |
34230240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 258 - 311
Target Start/End: Original strand, 34230259 - 34230312
Alignment:
| Q |
258 |
tgtatgaccatcagcaaaatattctcccatagcatgttttctgattcatctatc |
311 |
Q |
| |
|
||||||||||||||||||||||||||| |||| ||||||||||||||||||||| |
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|
| T |
34230259 |
tgtatgaccatcagcaaaatattctcctatagtatgttttctgattcatctatc |
34230312 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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