View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1715_low_108 (Length: 326)
Name: NF1715_low_108
Description: NF1715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1715_low_108 |
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Alignment Details
Target: chr4 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 5 - 310
Target Start/End: Original strand, 19400375 - 19400683
Alignment:
| Q |
5 |
gggttgttaaaattatcaaaggttgaaagaagtttgttcatcagaatgatattctctcaaaatatagattagaattcaaatgtgactcaatcatgacaac |
104 |
Q |
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| T |
19400375 |
gggttgttaaaattatcaaaggctgaaagaagtttgttcatcagaatgatattctctcaaaatatagattagaatttaaatgtgactcaatcatggcaac |
19400474 |
T |
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| Q |
105 |
caatattgtattagtgttcaagtattctctacctttaagacaaaatttcaactaactataatatgtatttccaatca---aataaccaacatccctagtt |
201 |
Q |
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| T |
19400475 |
caatattgtattagtgttcaagtattctccatctttcagacaaaatttcaactaactataatatgtatttccaatcaaataataaccaacatccttaatt |
19400574 |
T |
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| Q |
202 |
tttgttatgctttaataaatatattatgcacattgccaagttttacgacaattttcatatttttaattgccttttaactactatttaacttacttataat |
301 |
Q |
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| T |
19400575 |
tttgttatgctttaataaatatattatgcacattgccaagttttacgacaattttcatatttttaattgtcttttaactactatttaacttacttataat |
19400674 |
T |
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| Q |
302 |
attcttatt |
310 |
Q |
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| T |
19400675 |
actcttatt |
19400683 |
T |
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Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 78 - 124
Target Start/End: Original strand, 26630594 - 26630640
Alignment:
| Q |
78 |
attcaaatgtgactcaatcatgacaaccaatattgtattagtgttca |
124 |
Q |
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| T |
26630594 |
attcaaatgtgactcaatcatggcaaccaatattgtaatagttttca |
26630640 |
T |
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