View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1715_low_110 (Length: 324)

Name: NF1715_low_110
Description: NF1715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1715_low_110
NF1715_low_110
[»] chr7 (1 HSPs)
chr7 (17-308)||(31304693-31304984)


Alignment Details
Target: chr7 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 17 - 308
Target Start/End: Original strand, 31304693 - 31304984
Alignment:
Q  17 aactggtcatagtttgggagcagcattggctacgttgattgcgtatgatgttaagattagtgttcctaaactaatggtgacagtcatctcgtttggtggg 116  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  31304693 aactggacatagtttgggagcagcattggctacgttgattgcgtatgatgttaagattagtgttcccaaactaatggtgacagtcatctcgtttggtggg 31304792  T
Q  117 cctcgtgtgggcaatagaaattttcgacaacaccttgagaagcaaggaacaaaggttttgcgcatagtgaattcagatgatgttattaccaagctaccag 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31304793 cctcgtgtgggcaatagaaattttcgacaacaccttgagaagcaaggaacaaaggttttgcgcatagtgaattcagatgatgttattaccaagctaccag 31304892  T
Q  217 ggtttgtattttttgatgatgtggataagacaccatggatgtatgctgaagttggaaaggaacttcgattgtgtagtagggattctccttac 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31304893 ggtttgtattttttgatgatgtggataagacaccatggatgtatgctgaagttggaaaggaacttcgattgtgtagtagggattctccttac 31304984  T

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