View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1715_low_113 (Length: 321)

Name: NF1715_low_113
Description: NF1715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1715_low_113
NF1715_low_113
[»] chr5 (2 HSPs)
chr5 (220-321)||(5820248-5820349)
chr5 (107-156)||(5820408-5820457)
[»] chr6 (4 HSPs)
chr6 (17-102)||(24462908-24462993)
chr6 (17-103)||(29538084-29538170)
chr6 (20-105)||(9245304-9245389)
chr6 (17-104)||(24246912-24246999)
[»] scaffold0002 (1 HSPs)
scaffold0002 (17-100)||(288626-288709)
[»] chr4 (1 HSPs)
chr4 (17-100)||(18199088-18199171)
[»] scaffold0123 (1 HSPs)
scaffold0123 (17-103)||(5379-5465)
[»] chr3 (1 HSPs)
chr3 (38-103)||(15098564-15098629)
[»] chr8 (1 HSPs)
chr8 (17-104)||(19895743-19895830)


Alignment Details
Target: chr5 (Bit Score: 98; Significance: 3e-48; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 220 - 321
Target Start/End: Complemental strand, 5820349 - 5820248
Alignment:
Q  220 gatgaattgttaaatacaattagaagatattgatgtaatttatttattatcttttatgttattgattaatagaagaaaatattttagtgttgaattaatt 319  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5820349 gatgaattgttaaatacaattagaagatattgatgtgatttatttattatcttttatgttattgattaatagaagaaaatattttagtgttgaattaatt 5820250  T
Q  320 tt 321  Q
    ||    
T  5820249 tt 5820248  T

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Target: chr5; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 107 - 156
Target Start/End: Complemental strand, 5820457 - 5820408
Alignment:
Q  107 gtggtagtaatctaatggatcgtcttgataattatatccttatttagttt 156  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  5820457 gtggtagtaatgtaatggatcgtcttgataattatatccttatttagttt 5820408  T

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Target: chr6 (Bit Score: 74; Significance: 6e-34; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 17 - 102
Target Start/End: Original strand, 24462908 - 24462993
Alignment:
Q  17 aaaagcattgtcgaaaggtaagacaacgcttttaacgaatcaggcaacgcttttcagctgttgttatagaccgaaaatgttgtagt 102  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| |||||||||||||||||||||||||||    
T  24462908 aaaagcattgtcgaaaggtaagacaacgcttttaacgaatcaggaaacggttttcagccgttgttatagaccgaaaatgttgtagt 24462993  T

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Target: chr6; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 17 - 103
Target Start/End: Complemental strand, 29538170 - 29538084
Alignment:
Q  17 aaaagcattgtcgaaaggtaagacaacgcttttaacgaatcaggcaacgcttttcagctgttgttatagaccgaaaatgttgtagtg 103  Q
    ||||||||||||||||| || |||||||||||||||||||||||||||| ||||||||  |||||| ||||||||||||||||||||    
T  29538170 aaaagcattgtcgaaagatacgacaacgcttttaacgaatcaggcaacggttttcagccattgttacagaccgaaaatgttgtagtg 29538084  T

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Target: chr6; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 20 - 105
Target Start/End: Complemental strand, 9245389 - 9245304
Alignment:
Q  20 agcattgtcgaaaggtaagacaacgcttttaacgaatcaggcaacgcttttcagctgttgttatagaccgaaaatgttgtagtgtt 105  Q
    |||||||||||| | || | |||||||||||| ||||||| ||||| |||||||| ||||||| ||||||||||||||||||||||    
T  9245389 agcattgtcgaaggatatggcaacgcttttaatgaatcagacaacggttttcagccgttgttacagaccgaaaatgttgtagtgtt 9245304  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 17 - 104
Target Start/End: Original strand, 24246912 - 24246999
Alignment:
Q  17 aaaagcattgtcgaaaggtaagacaacgcttttaacgaatcaggcaacgcttttcagctgttgttatagaccgaaaatgttgtagtgt 104  Q
    ||||||||||||||||||||| |||||| ||||| | | |  ||| ||| |||||||| || ||| || ||| |||||||||||||||    
T  24246912 aaaagcattgtcgaaaggtaaaacaacggttttatcaactatggctacgattttcagccgtagttttaaaccaaaaatgttgtagtgt 24246999  T

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Target: scaffold0002 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 17 - 100
Target Start/End: Original strand, 288626 - 288709
Alignment:
Q  17 aaaagcattgtcgaaaggtaagacaacgcttttaacgaatcaggcaacgcttttcagctgttgttatagaccgaaaatgttgta 100  Q
    ||||||||||||| ||| || | ||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||    
T  288626 aaaagcattgtcgtaagatatggcaacgcttttaacgaatcaggcaacgcttttcagccgttgttacagaccgaaaatgttgta 288709  T

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Target: chr4 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 17 - 100
Target Start/End: Complemental strand, 18199171 - 18199088
Alignment:
Q  17 aaaagcattgtcgaaaggtaagacaacgcttttaacgaatcaggcaacgcttttcagctgttgttatagaccgaaaatgttgta 100  Q
    ||||||||||||| ||| || | ||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||    
T  18199171 aaaagcattgtcgtaagatatggcaacgcttttaacgaatcaggcaacgcttttcagccgttgttacagaccgaaaatgttgta 18199088  T

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Target: scaffold0123 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold0123
Description:

Target: scaffold0123; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 17 - 103
Target Start/End: Complemental strand, 5465 - 5379
Alignment:
Q  17 aaaagcattgtcgaaaggtaagacaacgcttttaacgaatcaggcaacgcttttcagctgttgttatagaccgaaaatgttgtagtg 103  Q
    ||||||||||||||||| || ||||||||||||||||||| |||| ||| |||||||| |||| || ||||||||||||||| ||||    
T  5465 aaaagcattgtcgaaagatacgacaacgcttttaacgaattaggcgacggttttcagccgttgatacagaccgaaaatgttgcagtg 5379  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 38 - 103
Target Start/End: Complemental strand, 15098629 - 15098564
Alignment:
Q  38 gacaacgcttttaacgaatcaggcaacgcttttcagctgttgttatagaccgaaaatgttgtagtg 103  Q
    ||||||| |||||| |||| ||| |||| |||| ||  ||||||||||||||||||||||||||||    
T  15098629 gacaacggttttaaggaattaggaaacggttttaaggcgttgttatagaccgaaaatgttgtagtg 15098564  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 17 - 104
Target Start/End: Original strand, 19895743 - 19895830
Alignment:
Q  17 aaaagcattgtcgaaaggtaagacaacgcttttaacgaatcaggcaacgcttttcagctgttgttatagaccgaaaatgttgtagtgt 104  Q
    ||||||||||||| ||||||| |||||| ||||| | | |  ||| ||| |||||||| || ||| |||||| |||||||||||||||    
T  19895743 aaaagcattgtcgtaaggtaaaacaacggttttatcaactatggctacgattttcagccgtagttttagaccaaaaatgttgtagtgt 19895830  T

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