View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1715_low_114 (Length: 319)

Name: NF1715_low_114
Description: NF1715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1715_low_114
NF1715_low_114
[»] chr3 (6 HSPs)
chr3 (136-302)||(11657615-11657777)
chr3 (136-280)||(38191542-38191687)
chr3 (12-97)||(11657494-11657579)
chr3 (137-239)||(13612929-13613031)
chr3 (12-97)||(38191725-38191814)
chr3 (12-96)||(13612801-13612889)
[»] chr7 (16 HSPs)
chr7 (134-299)||(22377824-22377988)
chr7 (138-299)||(11882416-11882577)
chr7 (140-283)||(28754222-28754366)
chr7 (140-283)||(7360068-7360211)
chr7 (142-298)||(15132197-15132353)
chr7 (138-299)||(41396295-41396456)
chr7 (136-299)||(8064765-8064927)
chr7 (16-97)||(15132068-15132149)
chr7 (15-97)||(22378022-22378103)
chr7 (12-68)||(29758864-29758919)
chr7 (12-97)||(7359943-7360032)
chr7 (13-49)||(28754132-28754168)
chr7 (12-59)||(8064644-8064691)
chr7 (12-67)||(11882649-11882704)
chr7 (20-60)||(21497263-21497303)
chr7 (12-60)||(41396173-41396221)
[»] chr2 (12 HSPs)
chr2 (134-298)||(32036399-32036563)
chr2 (136-299)||(8757747-8757910)
chr2 (142-299)||(25528633-25528789)
chr2 (136-299)||(22165913-22166075)
chr2 (136-274)||(42796467-42796605)
chr2 (136-298)||(14739686-14739847)
chr2 (12-97)||(8757958-8758043)
chr2 (12-97)||(25528829-25528914)
chr2 (137-209)||(25282112-25282184)
chr2 (15-97)||(14739879-14739965)
chr2 (12-68)||(42796348-42796404)
chr2 (20-66)||(31615250-31615296)
[»] chr4 (11 HSPs)
chr4 (136-299)||(18418885-18419049)
chr4 (137-298)||(41354180-41354341)
chr4 (136-294)||(856522-856680)
chr4 (134-298)||(32449149-32449307)
chr4 (21-97)||(41354066-41354145)
chr4 (17-65)||(36391783-36391831)
chr4 (29-97)||(856714-856785)
chr4 (20-68)||(19585436-19585484)
chr4 (12-61)||(25125185-25125235)
chr4 (20-67)||(36756244-36756291)
chr4 (15-68)||(3335498-3335551)
[»] chr8 (8 HSPs)
chr8 (136-298)||(18019587-18019749)
chr8 (136-299)||(8118712-8118874)
chr8 (136-283)||(15037330-15037480)
chr8 (142-227)||(16223538-16223623)
chr8 (20-89)||(27287271-27287342)
chr8 (13-55)||(15037544-15037586)
chr8 (12-61)||(30238980-30239030)
chr8 (12-68)||(15683259-15683316)
[»] chr1 (8 HSPs)
chr1 (137-283)||(30419618-30419764)
chr1 (136-299)||(19069984-19070147)
chr1 (136-299)||(19117874-19118037)
chr1 (136-298)||(24040125-24040284)
chr1 (20-68)||(9886036-9886084)
chr1 (12-97)||(19069864-19069951)
chr1 (12-97)||(19117754-19117841)
chr1 (20-72)||(5965469-5965521)
[»] chr6 (7 HSPs)
chr6 (136-299)||(8067986-8068149)
chr6 (136-264)||(15139160-15139288)
chr6 (142-276)||(34047826-34047960)
chr6 (12-68)||(7318605-7318661)
chr6 (12-97)||(15139322-15139410)
chr6 (49-97)||(34047998-34048046)
chr6 (140-207)||(25141586-25141653)
[»] chr5 (7 HSPs)
chr5 (136-213)||(17230699-17230776)
chr5 (12-97)||(17230579-17230664)
chr5 (20-68)||(6363281-6363329)
chr5 (20-68)||(32717514-32717562)
chr5 (12-68)||(11990967-11991022)
chr5 (12-68)||(17197380-17197436)
chr5 (20-60)||(1290515-1290555)


Alignment Details
Target: chr3 (Bit Score: 118; Significance: 3e-60; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 136 - 302
Target Start/End: Original strand, 11657615 - 11657777
Alignment:
Q  136 ggggacataaacctaactagtttatccacaaaatggaggtctacccaaacgggttatatgaaaattaaaaacaacacaggtagattataacatcctctta 235  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| || |||||||||||||||       
T  11657615 ggggacataaacctaactagtttatccacaaaatggaggtctacccgaacaggttatatgaaaattaaaaacaacacaagtggattataacatcctc--- 11657711  T
Q  236 agtagaggtctaatcagcggtgaatggaccaaccgtcaacacggagcaattccacgtaccatccaat 302  Q
     ||||||||||| |||| ||||||||||||||| ||||||||||||||| |||||||||||||||||    
T  11657712 -gtagaggtctagtcagtggtgaatggaccaactgtcaacacggagcaaatccacgtaccatccaat 11657777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 136 - 280
Target Start/End: Complemental strand, 38191687 - 38191542
Alignment:
Q  136 ggggacataaacctaactagtttatccacaaaatggaggtctacccaaacgggttatatgaaaa-ttaaaaacaacacaggtagattataacatcctctt 234  Q
    ||||| ||||||||||| |||||||| | ||||||||||||||||||||| | | ||||||||| |||||||||| |||  | |||||||||| ||||||    
T  38191687 ggggatataaacctaaccagtttatcgataaaatggaggtctacccaaacagctaatatgaaaaattaaaaacaaaacaaatggattataacagcctctt 38191588  T
Q  235 aagtagaggtctaatcagcggtgaatggaccaaccgtcaacacgga 280  Q
     |||||||||||| || ||||||||||||||||||||||| |||||    
T  38191587 gagtagaggtctagtccgcggtgaatggaccaaccgtcaatacgga 38191542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 12 - 97
Target Start/End: Original strand, 11657494 - 11657579
Alignment:
Q  12 gcaagagcaaatgacataaaaaagagtggcttccaactaagttggtacccaactctagtctctcagatgctcataaatatattatt 97  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||  || | ||||||||||||||||||||||||    
T  11657494 gcaagagcaaatgacataaaaaagagtggcttccaactaagttggtacccaactcaggtttgtcagatgctcataaatatattatt 11657579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 137 - 239
Target Start/End: Original strand, 13612929 - 13613031
Alignment:
Q  137 gggacataaacctaactagtttatccacaaaatggaggtctacccaaacgggttatatgaaaattaaaaacaacacaggtagattataacatcctcttaa 236  Q
    |||||||||||||||| |||||||||| ||||||||||||||||||||||||| ||||||||| |||||||||| ||| | |||||||| | ||||||||    
T  13612929 gggacataaacctaaccagtttatccataaaatggaggtctacccaaacgggtcatatgaaaaataaaaacaacgcagatggattataatagcctcttaa 13613028  T
Q  237 gta 239  Q
    |||    
T  13613029 gta 13613031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 12 - 97
Target Start/End: Complemental strand, 38191814 - 38191725
Alignment:
Q  12 gcaagagcaaatgacataaa-aaagagtggcttccaactaagttggtacccaactcta---gtctctcagatgctcataaatatattatt 97  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    ||| ||| ||||||||||||||||||||    
T  38191814 gcaagagcaaatgacataaacaaagagtggcttccaactaagttggtacccaactctaatcttctgtcaaatgctcataaatatattatt 38191725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 12 - 96
Target Start/End: Original strand, 13612801 - 13612889
Alignment:
Q  12 gcaagagcaaatgacataaaaa-agagtggcttccaactaagttggtacccaactcta---gtctctcagatgctcataaatatattat 96  Q
    |||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||    |||  || |||||||||||||||||||    
T  13612801 gcaagagcaaatgacaaaaaaacagagtggcttccaactaagttggtacccaactctaaacttctgccaaatgctcataaatatattat 13612889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 102; Significance: 1e-50; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 134 - 299
Target Start/End: Complemental strand, 22377988 - 22377824
Alignment:
Q  134 ctggggacataaacctaactagtttatccacaaaatggaggtctacccaaacgggttatatgaaaattaaaaacaacacaggtagattataacatcctct 233  Q
    ||||||||||||||||||| |||||||||||||||||||| |||||| |||| ||| ||||||||||||||||||||||| || ||||||||||||||||    
T  22377988 ctggggacataaacctaaccagtttatccacaaaatggagatctaccgaaactggtaatatgaaaattaaaaacaacacaagtggattataacatcctct 22377889  T
Q  234 taagtagaggtctaatcagcggtgaatggaccaaccgtcaacacggagcaattccacgtaccatcc 299  Q
    ||||||||||||||  | |||||||||||||||||||| |||||||| ||  || |||||||||||    
T  22377888 taagtagaggtctagactgcggtgaatggaccaaccgt-aacacggaacagatctacgtaccatcc 22377824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 138 - 299
Target Start/End: Complemental strand, 11882577 - 11882416
Alignment:
Q  138 ggacataaacctaactagtttatccacaaaatggaggtctacccaaacgggttatatgaaaattaaaaacaacacaggtagattataacatcctcttaag 237  Q
    |||||||||||||||||||||||||| ||||||||||||||||  ||  ||| ||||||||||||||| |||||||  |||||||||||| |||||||||    
T  11882577 ggacataaacctaactagtttatccataaaatggaggtctaccttaataggtaatatgaaaattaaaagcaacacaaatagattataacaacctcttaag 11882478  T
Q  238 tagaggtctaatcagcggtgaatggaccaaccgtcaacacggagcaattccacgtaccatcc 299  Q
    ||||||||||  | | ||||||||||||||||||||||||||||||  ||||||||||||||    
T  11882477 tagaggtctagaccgtggtgaatggaccaaccgtcaacacggagcagatccacgtaccatcc 11882416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 140 - 283
Target Start/End: Original strand, 28754222 - 28754366
Alignment:
Q  140 acataaacctaactagtttatccacaaaatggaggtctacccaaacgggttatatgaaaattaaaaacaacacaggtagattataacatcctcttaagta 239  Q
    ||||||| ||||| ||| ||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| || ||||||||||||||||||||||    
T  28754222 acataaatctaaccagtatattcacaaaatggaggtctacccaaacgggtaatatgaaaattaaaaacaacacaagtggattataacatcctcttaagta 28754321  T
Q  240 gaggtctaatcagcgg-tgaatggaccaaccgtcaacacggagca 283  Q
    ||||||||  | |||| |||||||||||||||||||||| |||||    
T  28754322 gaggtctagactgcggttgaatggaccaaccgtcaacacagagca 28754366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 140 - 283
Target Start/End: Original strand, 7360068 - 7360211
Alignment:
Q  140 acataaacctaactagtttatccacaaaatggaggtctacccaaacgggttatatgaaaattaaaaacaacacaggtagattataacatcctcttaagta 239  Q
    ||||||||||||| |||||||||||| ||||||||| ||||||||||||| ||||||||||||||||||||||| || |||||||||| |||||||||||    
T  7360068 acataaacctaaccagtttatccacacaatggaggtatacccaaacgggtaatatgaaaattaaaaacaacacaagtggattataacagcctcttaagta 7360167  T
Q  240 gaggtctaatcagcggtgaatggaccaaccgtcaacacggagca 283  Q
    ||||||||  | ||| |||||||||||| ||||||||| |||||    
T  7360168 gaggtctagaccgcgatgaatggaccaatcgtcaacacagagca 7360211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 142 - 298
Target Start/End: Original strand, 15132197 - 15132353
Alignment:
Q  142 ataaacctaactagtttatccacaaaatggaggtctacccaaacgggttatatgaaaattaaaaacaacacaggtagattataacatcctcttaagtaga 241  Q
    ||||||||||| ||||||| |||||||||||| ||||||||||||||| ||||||||||||||||||||||| ||  |||||||  | ||||||||||||    
T  15132197 ataaacctaaccagtttattcacaaaatggagatctacccaaacgggtaatatgaaaattaaaaacaacacaagtgtattataatgtactcttaagtaga 15132296  T
Q  242 ggtctaatcagcggtgaatggaccaaccgtcaacacggagcaattccacgtaccatc 298  Q
    ||||||    ||||||||||||||||| ||||||||||||||  |||||||||||||    
T  15132297 ggtctagattgcggtgaatggaccaactgtcaacacggagcagatccacgtaccatc 15132353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 138 - 299
Target Start/End: Original strand, 41396295 - 41396456
Alignment:
Q  138 ggacataaacctaactagtttatccacaaaatggaggtctacccaaacgggttatatgaaaattaaaaacaacacaggtagattataacatcctcttaag 237  Q
    ||||||||||||||| |||||||||| | ||| |||||||||||||| |||  |||| |||||||||| |||||||  | ||||||| || |||||||||    
T  41396295 ggacataaacctaaccagtttatccatagaattgaggtctacccaaaggggcaatataaaaattaaaagcaacacaaatggattatagcagcctcttaag 41396394  T
Q  238 tagaggtctaatcagcggtgaatggaccaaccgtcaacacggagcaattccacgtaccatcc 299  Q
     | |||||||  | |||||||||||| |||||||||||||||||||| ||||||||||||||    
T  41396395 caaaggtctagaccgcggtgaatggatcaaccgtcaacacggagcaaatccacgtaccatcc 41396456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 136 - 299
Target Start/End: Original strand, 8064765 - 8064927
Alignment:
Q  136 ggggacataaacctaactagtttatccacaaaatggaggtctacccaaacgggttatatgaaaattaaaaacaacacaggtagattataacatcctctta 235  Q
    ||||||||||||||||| |||| ||||| | ||||||||||||||||||||||  ||||||||||||||| |||||||  | ||||||| ||  ||||||    
T  8064765 ggggacataaacctaaccagtt-atccatagaatggaggtctacccaaacgggcaatatgaaaattaaaagcaacacaaatggattatagcagtctctta 8064863  T
Q  236 agtagaggtctaatcagcggtgaatggaccaaccgtcaacacggagcaattccacgtaccatcc 299  Q
    || | |||||||  | | |||||||||| ||||||||||||| |||||| |||| ||| |||||    
T  8064864 agcaaaggtctagaccgtggtgaatggatcaaccgtcaacacagagcaaatccaggtatcatcc 8064927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 16 - 97
Target Start/End: Original strand, 15132068 - 15132149
Alignment:
Q  16 gagcaaatgacataaaaaagagtggcttccaactaagttggtacccaactctagtctctcagatgctcataaatatattatt 97  Q
    |||||||||||||||||||||||||||| ||| |||||| ||| ||||||||| ||| ||||||||||||||||||||||||    
T  15132068 gagcaaatgacataaaaaagagtggctttcaattaagttagtatccaactctaatctatcagatgctcataaatatattatt 15132149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 15 - 97
Target Start/End: Complemental strand, 22378103 - 22378022
Alignment:
Q  15 agagcaaatgacataaaaaagagtggcttccaactaagttggtacccaactctagtctctcagatgctcataaatatattatt 97  Q
    ||||||||||||||||||| ||| |||| |||||||| | |||||||||||||| | | ||||||||||||||||||||||||    
T  22378103 agagcaaatgacataaaaa-gagcggctcccaactaaatcggtacccaactctaatgtgtcagatgctcataaatatattatt 22378022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 12 - 68
Target Start/End: Complemental strand, 29758919 - 29758864
Alignment:
Q  12 gcaagagcaaatgacataaaaaagagtggcttccaactaagttggtacccaactcta 68  Q
    ||||||||||| ||||||||| ||||||||| | |||||||||||||||||||||||    
T  29758919 gcaagagcaaa-gacataaaatagagtggctccaaactaagttggtacccaactcta 29758864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 12 - 97
Target Start/End: Original strand, 7359943 - 7360032
Alignment:
Q  12 gcaagagcaaatgacataaaaaaga-gtggcttccaactaagttggtacccaactctagtctct---cagatgctcataaatatattatt 97  Q
    |||||||||||||| | |||||| | ||||||  |||||||||| ||| ||||||||| |||||   |||||||||||||||||||||||    
T  7359943 gcaagagcaaatgatagaaaaaaaaagtggctctcaactaagttagtatccaactctaatctcttgtcagatgctcataaatatattatt 7360032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 49
Target Start/End: Original strand, 28754132 - 28754168
Alignment:
Q  13 caagagcaaatgacataaaaaagagtggcttccaact 49  Q
    |||||||||||||||||||||||||||||| ||||||    
T  28754132 caagagcaaatgacataaaaaagagtggctcccaact 28754168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 12 - 59
Target Start/End: Original strand, 8064644 - 8064691
Alignment:
Q  12 gcaagagcaaatgacataaaaaagagtggcttccaactaagttggtac 59  Q
    |||||||||| |||||||||||||||||  | ||||||||||||||||    
T  8064644 gcaagagcaagtgacataaaaaagagtgtatcccaactaagttggtac 8064691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 12 - 67
Target Start/End: Complemental strand, 11882704 - 11882649
Alignment:
Q  12 gcaagagcaaatgacataaaaaagagtggcttccaactaagttggtacccaactct 67  Q
    |||||| ||||||||||||| ||||||||||  |||||| ||||||||| ||||||    
T  11882704 gcaagaacaaatgacataaataagagtggctctcaactacgttggtaccgaactct 11882649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 60
Target Start/End: Complemental strand, 21497303 - 21497263
Alignment:
Q  20 aaatgacataaaaaagagtggcttccaactaagttggtacc 60  Q
    ||||||||||||||||| | |||| ||||||||||||||||    
T  21497303 aaatgacataaaaaagattagctttcaactaagttggtacc 21497263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 60
Target Start/End: Original strand, 41396173 - 41396221
Alignment:
Q  12 gcaagagcaaatgacataaaaaagagtggcttccaactaagttggtacc 60  Q
    |||||||||| |||||||||||||||||  |  ||||||||||||||||    
T  41396173 gcaagagcaagtgacataaaaaagagtgtatcgcaactaagttggtacc 41396221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 101; Significance: 5e-50; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 134 - 298
Target Start/End: Complemental strand, 32036563 - 32036399
Alignment:
Q  134 ctggggacataaacctaactagtttatccacaaaatggaggtctacccaaacgggttatatgaaaattaaaaacaacacaggtagattataacatcctct 233  Q
    |||||||||||||||||||  |||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||  | ||| |||||| |||||    
T  32036563 ctggggacataaacctaaccggtttatccacaaaatgtaggtctacccaaacgggtaatatgaaaattaaaaacaacacaaatggatcataacaacctct 32036464  T
Q  234 taagtagaggtctaatcagcggtgaatggaccaaccgtcaacacggagcaattccacgtaccatc 298  Q
    |||||||||||| || | ||||||||||||||||||||||||||| ||||  ||||| |||||||    
T  32036463 taagtagaggtcgaaactgcggtgaatggaccaaccgtcaacacgaagcaggtccacataccatc 32036399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 136 - 299
Target Start/End: Complemental strand, 8757910 - 8757747
Alignment:
Q  136 ggggacataaacctaactagtttatccacaaaatggaggtctacccaaacgggttatatgaaaattaaaaacaacacaggtagattataacatcctctta 235  Q
    |||||||||||| |||| |||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| || ||||| ||||||||||||    
T  8757910 ggggacataaacttaaccagtttatccacaaaatagaggtctacccaaacgggtaatatgaaaattaaaaacaacacaagtggattaaaacatcctctta 8757811  T
Q  236 agtagaggtctaatcagcggtgaatggaccaaccgtcaacacggagcaattccacgtaccatcc 299  Q
    | || | |||||  | || |||||||||||||||||||||||||||||  ||||||||||||||    
T  8757810 aataaatgtctagaccgcagtgaatggaccaaccgtcaacacggagcagatccacgtaccatcc 8757747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 142 - 299
Target Start/End: Complemental strand, 25528789 - 25528633
Alignment:
Q  142 ataaacctaactagtttatccacaaaatggaggtctacccaaacgggttatatgaaaattaaaaacaacacaggtagattataacatcctcttaagtaga 241  Q
    ||||||||||| ||||| |||||||||| ||||||||||||||||||| ||||||||||||||||||||||| || ||| |||| | ||||| |||||||    
T  25528789 ataaacctaaccagtttttccacaaaatagaggtctacccaaacgggtaatatgaaaattaaaaacaacacaagtggataataatagcctctaaagtaga 25528690  T
Q  242 ggtctaatcagcggtgaatggaccaaccgtcaacacggagcaattccacgtaccatcc 299  Q
    ||||||  | ||||||||||||||||||||||||||||||||| ||||| ||||||||    
T  25528689 ggtctagaccgcggtgaatggaccaaccgtcaacacggagcaa-tccacataccatcc 25528633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 136 - 299
Target Start/End: Complemental strand, 22166075 - 22165913
Alignment:
Q  136 ggggacataaacctaactagtttatccacaaaatggaggtctacccaaacgggttatatgaaaattaaaaacaacacaggtagattataacatcctctta 235  Q
    |||||||||||| |||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |  | |||||||||| ||| |||    
T  22166075 ggggacataaacttaaccagtttatccacaaaatggaggtctacccaaacgggtgatatgaaaattaaaaacaacataaatggattataacagcctttta 22165976  T
Q  236 agtagaggtctaatcagcggtgaatggaccaaccgtcaacacggagcaattccacgtaccatcc 299  Q
     ||| |||| ||  |  ||||||||||| |||||||||||| |||  |  ||||||||||||||    
T  22165975 cgtaaaggt-tagaccacggtgaatggatcaaccgtcaacatggaatagatccacgtaccatcc 22165913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 136 - 274
Target Start/End: Original strand, 42796467 - 42796605
Alignment:
Q  136 ggggacataaacctaactagtttatccacaaaatggaggtctacccaaacgggttatatgaaaattaaaaacaacacaggtagattataacatcctctta 235  Q
    ||||||||||||||||| || |||||||||||||| || ||||||||||| ||| |||||||||||||||||||||||  | ||| | |||| |||||||    
T  42796467 ggggacataaacctaaccagattatccacaaaatgtagttctacccaaacaggtaatatgaaaattaaaaacaacacaaatggatcaaaacagcctctta 42796566  T
Q  236 agtagaggtcta-atcagcggtgaatggaccaaccgtcaa 274  Q
    |||||||||||| ||| | |||||||||||||||||||||    
T  42796567 agtagaggtctagatc-gtggtgaatggaccaaccgtcaa 42796605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 136 - 298
Target Start/End: Complemental strand, 14739847 - 14739686
Alignment:
Q  136 ggggacataaacctaactagtttatccacaaaatggaggtctacccaaacgggttatatgaaaattaaaaacaacacaggtagattataacatcctctta 235  Q
    |||| |||||||||||| |||||||||| || |||||||||||||||||||  | | |||||||||||||||||||||  | |||||||||| |||||||    
T  14739847 ggggtcataaacctaaccagtttatccataatatggaggtctacccaaacga-taagatgaaaattaaaaacaacacaaatggattataacaacctctta 14739749  T
Q  236 agtagaggtctaatcagcggtgaatggaccaaccgtcaacacggagcaattccacgtaccatc 298  Q
    |  ||||||||||   |||||||||||| |||||||||||| | ||||  |||||||||||||    
T  14739748 aacagaggtctaaatcgcggtgaatggatcaaccgtcaacatgaagcagatccacgtaccatc 14739686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 12 - 97
Target Start/End: Complemental strand, 8758043 - 8757958
Alignment:
Q  12 gcaagagcaaatgacataaaaaagagtggcttccaactaagttggtacccaactctagtctctcagatgctcataaatatattatt 97  Q
    ||||||| |||||| |||||| ||||| ||| |||||||||||||||| |||||||| ||| |||||| |||||||||||||||||    
T  8758043 gcaagagtaaatgatataaaagagagtagctcccaactaagttggtactcaactctaatctgtcagatactcataaatatattatt 8757958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 12 - 97
Target Start/End: Complemental strand, 25528914 - 25528829
Alignment:
Q  12 gcaagagcaaatgacataaaaaagagtggcttccaactaagttggtacccaactctagtctctcagatgctcataaatatattatt 97  Q
    |||||| ||||||||||||||||||||||||  |||||||||||  ||||||||||| ||| ||| ||||| ||||||||||||||    
T  25528914 gcaagaacaaatgacataaaaaagagtggctcgcaactaagttgagacccaactctaatctgtcaaatgcttataaatatattatt 25528829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 137 - 209
Target Start/End: Complemental strand, 25282184 - 25282112
Alignment:
Q  137 gggacataaacctaactagtttatccacaaaatggaggtctacccaaacgggttatatgaaaattaaaaacaa 209  Q
    ||||| ||||||||||  |||||||||||| |||||| |||||||||||  || |||||||||||||||||||    
T  25282184 gggacctaaacctaacgggtttatccacaatatggagatctacccaaacatgtaatatgaaaattaaaaacaa 25282112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 97
Target Start/End: Complemental strand, 14739965 - 14739879
Alignment:
Q  15 agagcaaatgacataaaaaa--gagtggcttccaactaagttggtacccaactctagtctc---tcagatgctcataaatatattatt 97  Q
    ||||||||||||||||||||  |||||||||| ||| ||||||||| ||||||||| |||    ||| ||||||||||||||||||||    
T  14739965 agagcaaatgacataaaaaaaagagtggcttcgaac-aagttggtatccaactctaatcttctatcaaatgctcataaatatattatt 14739879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 68
Target Start/End: Original strand, 42796348 - 42796404
Alignment:
Q  12 gcaagagcaaatgacataaaaaagagtggcttccaactaagttggtacccaactcta 68  Q
    ||||||||||||||||| |||||||||| |  |||| ||||||||||||||| ||||    
T  42796348 gcaagagcaaatgacatcaaaaagagtgacacccaattaagttggtacccaattcta 42796404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 66
Target Start/End: Original strand, 31615250 - 31615296
Alignment:
Q  20 aaatgacataaaaaagagtggcttccaactaagttggtacccaactc 66  Q
    |||||||||  |||||||||| |||||||||||||||||||| ||||    
T  31615250 aaatgacatcgaaaagagtggtttccaactaagttggtaccctactc 31615296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 93; Significance: 3e-45; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 136 - 299
Target Start/End: Complemental strand, 18419049 - 18418885
Alignment:
Q  136 ggggacataaacctaactagtttatccacaaaatggaggtctacccaaacgggttatatgaaaatt-aaaaacaacacaggtagattataacatcctctt 234  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||  || |||| |||||| ||||||||||||  |  ||||||||| ||||||    
T  18419049 ggggacataaacctaactagtttatccataaaatggaggtctacccaaacatgtgatattaaaatttaaaaacaacacaaatgaattataacagcctctt 18418950  T
Q  235 aagtagaggtctaatcagcggtgaatggaccaaccgtcaacacggagcaattccacgtaccatcc 299  Q
    |||||||||||||  | |||||||||||||||||||| |||||||||||  ||||||||||||||    
T  18418949 aagtagaggtctagactgcggtgaatggaccaaccgttaacacggagcagatccacgtaccatcc 18418885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 137 - 298
Target Start/End: Original strand, 41354180 - 41354341
Alignment:
Q  137 gggacataaacctaactagtttatccacaaaatggaggtctacccaaacgggttatatgaaaattaaaaacaacacaggtagattataacatcctcttaa 236  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||| | ||||||||||||||| |||||||  |||||||||||| ||||||||    
T  41354180 gggacataaacctaactagtttatccataaaatggaggtctacccaaacggataatatgaaaattaaaagcaacacaaatagattataacaacctcttaa 41354279  T
Q  237 gtagaggtctaatcagcggtgaatggaccaaccgtcaacacggagcaattccacgtaccatc 298  Q
    |||| ||||||  | ||||||||||||| |   |||| ||| |||||  |||||||||||||    
T  41354280 gtaggggtctagaccgcggtgaatggactatttgtcagcacagagcagatccacgtaccatc 41354341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 136 - 294
Target Start/End: Complemental strand, 856680 - 856522
Alignment:
Q  136 ggggacataaacctaactagtttatccacaaaatggaggtctacccaaacgggttatatgaaaattaaaaacaacacaggtagattataacatcctctta 235  Q
    |||||||||||||| || |||||||||| ||||||||||||||||||||| ||| |||| |||||||||||||| |||  ||||||| |||| |||||||    
T  856680 ggggacataaacctgaccagtttatccataaaatggaggtctacccaaacaggtaatatcaaaattaaaaacaatacaaatagattaaaacagcctctta 856581  T
Q  236 agtagaggtctaatcagcggtgaatggaccaaccgtcaacacggagcaattccacgtac 294  Q
    |||||| |||||  | |||||||||||| |||| ||||||||||||||  |||||||||    
T  856580 agtagatgtctagaccgcggtgaatggatcaactgtcaacacggagcagatccacgtac 856522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 134 - 298
Target Start/End: Original strand, 32449149 - 32449307
Alignment:
Q  134 ctggggacataaacctaactagtttatccacaaaatggaggtctacccaaacgggttatatgaaaattaaaaacaacacaggtagattataacatcctct 233  Q
    ||||| |||| |||||||| |||||||||| |||||| || |||||||||||| ||||||||||||||   ||||||||   | ||| | |||| ||||     
T  32449149 ctgggaacatcaacctaaccagtttatccataaaatgtagatctacccaaacgtgttatatgaaaatt---aacaacaccaatggatcaaaacagcctcc 32449245  T
Q  234 taagtagaggtctaatcagcggtgaatggaccaaccgtcaacacggagcaattccacgtaccatc 298  Q
    |   ||||||||||  | |  |||||||||||||||||||||||||||||  |||||||||||||    
T  32449246 t---tagaggtctagactgtagtgaatggaccaaccgtcaacacggagcatatccacgtaccatc 32449307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 21 - 97
Target Start/End: Original strand, 41354066 - 41354145
Alignment:
Q  21 aatgacataaaaaagagtggcttccaactaagttggtacccaactcta---gtctctcagatgctcataaatatattatt 97  Q
    ||||||||||||||||||| ||  ||||||||||||||||||||||||    ||| ||| ||||||||||||||||||||    
T  41354066 aatgacataaaaaagagtgactcgcaactaagttggtacccaactctaatcttctgtcaaatgctcataaatatattatt 41354145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 17 - 65
Target Start/End: Original strand, 36391783 - 36391831
Alignment:
Q  17 agcaaatgacataaaaaagagtggcttccaactaagttggtacccaact 65  Q
    |||||||||||||||||||||||||| ||||||||||||||||| ||||    
T  36391783 agcaaatgacataaaaaagagtggctcccaactaagttggtacctaact 36391831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 29 - 97
Target Start/End: Complemental strand, 856785 - 856714
Alignment:
Q  29 aaaaaagagtggcttccaactaagttggtacccaactctagtc-tct--cagatgctcataaatatattatt 97  Q
    ||||||||||||||  |||||||||||||||||||||||| || |||  || ||||||||||||||||||||    
T  856785 aaaaaagagtggctcgcaactaagttggtacccaactctaatcttctgccaaatgctcataaatatattatt 856714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 20 - 68
Target Start/End: Original strand, 19585436 - 19585484
Alignment:
Q  20 aaatgacataaaaaagagtggcttccaactaagttggtacccaactcta 68  Q
    |||||||||||||||||| |||| |||||||||||||||||| ||||||    
T  19585436 aaatgacataaaaaagagaggctcccaactaagttggtaccctactcta 19585484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 61
Target Start/End: Original strand, 25125185 - 25125235
Alignment:
Q  12 gcaagagcaaa-tgacataaaaaagagtggcttccaactaagttggtaccc 61  Q
    ||||||||||| |||||||||||||||| ||| ||||||||||||||||||    
T  25125185 gcaagagcaaaatgacataaaaaagagttgctcccaactaagttggtaccc 25125235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 20 - 67
Target Start/End: Complemental strand, 36756291 - 36756244
Alignment:
Q  20 aaatgacataaaaaagagtggcttccaactaagttggtacccaactct 67  Q
    ||||||||| ||| |||| ||||||||||||||||||||||| |||||    
T  36756291 aaatgacatcaaatagagaggcttccaactaagttggtaccctactct 36756244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 68
Target Start/End: Complemental strand, 3335551 - 3335498
Alignment:
Q  15 agagcaaatgacataaaaaagagtggcttccaactaagttggtacccaactcta 68  Q
    |||||||||||||| |||||||| | || |||| |||||||||| |||||||||    
T  3335551 agagcaaatgacatcaaaaagagcgactcccaaataagttggtatccaactcta 3335498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 91; Significance: 4e-44; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 136 - 298
Target Start/End: Original strand, 18019587 - 18019749
Alignment:
Q  136 ggggacataaacctaactagtttatccacaaaatggaggtctacccaaacgggttatatgaaaattaaaaacaacacaggtagattataacatcctctta 235  Q
    |||||||||||||||||  ||||||||| |  |||||||||||||||||||||| |||||||||||||||||||||||  |||||||||||  |||||||    
T  18019587 ggggacataaacctaaccggtttatccatagtatggaggtctacccaaacgggtaatatgaaaattaaaaacaacacaaatagattataacggcctctta 18019686  T
Q  236 agtagaggtctaatcagcggtgaatggaccaaccgtcaacacggagcaattccacgtaccatc 298  Q
    | |||||||||||    ||||||||||| |||||||||||||||||||  |||||||||||||    
T  18019687 aatagaggtctaaatcccggtgaatggatcaaccgtcaacacggagcatatccacgtaccatc 18019749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 136 - 299
Target Start/End: Original strand, 8118712 - 8118874
Alignment:
Q  136 ggggacataaacctaactagtttatccacaaaatggaggtctacccaaacgggttatatgaaaattaaaaacaacacaggtagattataacatcctctta 235  Q
    |||||||||||| | || | |||||||||||| |||||||||||||||||||   ||||||||||||||||||||||| || ||||||||||||||||||    
T  8118712 ggggacataaacttgaccaatttatccacaaa-tggaggtctacccaaacggaaaatatgaaaattaaaaacaacacaagtggattataacatcctctta 8118810  T
Q  236 agtagaggtcta-atcagcggtgaatggaccaaccgtcaacacggagcaattccacgtaccatcc 299  Q
    || |||||| || ||| |||||||||||||||||||||||||  ||| |  ||||||||||||||    
T  8118811 agcagaggtatagatc-gcggtgaatggaccaaccgtcaacatagagaagatccacgtaccatcc 8118874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 136 - 283
Target Start/End: Complemental strand, 15037480 - 15037330
Alignment:
Q  136 ggggacataaacctaa---ctagtttatccacaaaatggaggtctacccaaacgggttatatgaaaattaaaaacaacacaggtagattataacatcctc 232  Q
    ||||||||||||||||   |||||||||||| |||||| |||| |||||||||  || |||||||||||||||||||||||  | ||| | |||| ||||    
T  15037480 ggggacataaacctaataactagtttatccataaaatgtaggtatacccaaacatgtaatatgaaaattaaaaacaacacaaattgatcaaaacagcctc 15037381  T
Q  233 ttaagtagaggtctaatcagcggtgaatggaccaaccgtcaacacggagca 283  Q
    |||||||||||||||  |  ||||||| ||||||| ||| |||||||||||    
T  15037380 ttaagtagaggtctagaccacggtgaacggaccaatcgtaaacacggagca 15037330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 142 - 227
Target Start/End: Original strand, 16223538 - 16223623
Alignment:
Q  142 ataaacctaactagtttatccacaaaatggaggtctacccaaacgggttatatgaaaattaaaaacaacacaggtagattataaca 227  Q
    ||||||||||| | |||||| | ||||||||| |||| ||||| |||| |||||||||||||||||||||||  || |||||||||    
T  16223538 ataaacctaaccaatttatctataaaatggagttctaaccaaatgggtgatatgaaaattaaaaacaacacaaataaattataaca 16223623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 89
Target Start/End: Complemental strand, 27287342 - 27287271
Alignment:
Q  20 aaatgacataaaaaagagtggcttccaactaagttggtacccaactctagtc--tctcagatgctcataaat 89  Q
    ||||||||| | | |||| ||||||||||||||||||||||| |||||| ||  | ||||||||||||||||    
T  27287342 aaatgacatcagacagagaggcttccaactaagttggtaccctactctaatctttgtcagatgctcataaat 27287271  T

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Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 55
Target Start/End: Complemental strand, 15037586 - 15037544
Alignment:
Q  13 caagagcaaatgacataaaaaagagtggcttccaactaagttg 55  Q
    |||||||||||||||| |||||||||||||  |||||||||||    
T  15037586 caagagcaaatgacatcaaaaagagtggctctcaactaagttg 15037544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 61
Target Start/End: Complemental strand, 30239030 - 30238980
Alignment:
Q  12 gcaagagcaaa-tgacataaaaaagagtggcttccaactaagttggtaccc 61  Q
    ||||||||||| | |||||||||||||||||||  ||||||||||||||||    
T  30239030 gcaagagcaaaataacataaaaaagagtggctttgaactaagttggtaccc 30238980  T

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Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 68
Target Start/End: Original strand, 15683259 - 15683316
Alignment:
Q  12 gcaagagcaaa-tgacataaaaaagagtggcttccaactaagttggtacccaactcta 68  Q
    ||||||||||| |||||| ||| |||||| || ||||| |||||||||||||||||||    
T  15683259 gcaagagcaaaatgacatcaaagagagtgactcccaaccaagttggtacccaactcta 15683316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 83; Significance: 3e-39; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 137 - 283
Target Start/End: Original strand, 30419618 - 30419764
Alignment:
Q  137 gggacataaacctaactagtttatccacaaaatggaggtctacccaaacgggttatatgaaaattaaaaacaacacaggtagattataacatcctcttaa 236  Q
    |||||||||||||||| | ||||||||||||||| ||||||||| ||| |||| ||||||||||||||||||||| || | |||||||||| ||||||||    
T  30419618 gggacataaacctaaccaatttatccacaaaatgtaggtctacctaaatgggtaatatgaaaattaaaaacaacagagatggattataacagcctcttaa 30419717  T
Q  237 gtagaggtctaatcagcggtgaatggaccaaccgtcaacacggagca 283  Q
    ||||| || ||| | |||||| ||||| |||||||||||||||||||    
T  30419718 gtagaagtttaaaccgcggtgcatggatcaaccgtcaacacggagca 30419764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 136 - 299
Target Start/End: Original strand, 19069984 - 19070147
Alignment:
Q  136 ggggacataaacctaactagtttatccacaaaatggaggtctacccaaacgggttatatgaaaattaaaaacaacacaggtagattataacatcctctta 235  Q
    ||||||||||||||||| |||||||||| | |||||||||||||| |||||||  ||||||||||||||| |||||||  | ||||||| || |||||||    
T  19069984 ggggacataaacctaaccagtttatccatagaatggaggtctacctaaacgggcaatatgaaaattaaaagcaacacaattggattatagcagcctctta 19070083  T
Q  236 agtagaggtctaatcagcggtgaatggaccaaccgtcaacacggagcaattccacgtaccatcc 299  Q
    || | |||||||  | |||||||||||| |||||||||||||||||||| ||||| || |||||    
T  19070084 agcaaaggtctagaccgcggtgaatggatcaaccgtcaacacggagcaaatccacatatcatcc 19070147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 136 - 299
Target Start/End: Original strand, 19117874 - 19118037
Alignment:
Q  136 ggggacataaacctaactagtttatccacaaaatggaggtctacccaaacgggttatatgaaaattaaaaacaacacaggtagattataacatcctctta 235  Q
    ||||||||||||||||| |||||||||| | |||||||||||||| |||||||  ||||||||||||||| |||||||  | ||||||| || |||||||    
T  19117874 ggggacataaacctaaccagtttatccatagaatggaggtctacctaaacgggcaatatgaaaattaaaagcaacacaattggattatagcagcctctta 19117973  T
Q  236 agtagaggtctaatcagcggtgaatggaccaaccgtcaacacggagcaattccacgtaccatcc 299  Q
    || | |||||||  | |||||||||||| |||||||||||||||||||| ||||| || |||||    
T  19117974 agcaaaggtctagaccgcggtgaatggatcaaccgtcaacacggagcaaatccacatatcatcc 19118037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 136 - 298
Target Start/End: Complemental strand, 24040284 - 24040125
Alignment:
Q  136 ggggacataaacctaactagtttatccacaaaatggaggtctacccaaacgggttatatgaaaattaaaaacaacacaggtagattataacatcctctta 235  Q
    |||||||||||| |||| | |||||||||  |||  |||||||||||||||||| | || |||||| |||||||||||  | ||| | |||| ||||||     
T  24040284 ggggacataaacttaaccaatttatccacggaatataggtctacccaaacgggtaacataaaaatttaaaacaacacaaatggatcaaaacaacctctt- 24040186  T
Q  236 agtagaggtctaatcagcggtgaatggaccaaccgtcaacacggagcaattccacgtaccatc 298  Q
      ||||||||||  | | |||||||||||||||| |||||||||||||  |||||||||||||    
T  24040185 --tagaggtctagactggggtgaatggaccaaccatcaacacggagcagatccacgtaccatc 24040125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 20 - 68
Target Start/End: Complemental strand, 9886084 - 9886036
Alignment:
Q  20 aaatgacataaaaaagagtggcttccaactaagttggtacccaactcta 68  Q
    ||||||||| |||| |||||||||||||||||||||||| |||||||||    
T  9886084 aaatgacatcaaaaggagtggcttccaactaagttggtatccaactcta 9886036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 97
Target Start/End: Original strand, 19069864 - 19069951
Alignment:
Q  12 gcaagagcaaatgacataaaaaagagtggcttccaactaagttggtacccaactctagtc---tctcagatgctcataaatatattatt 97  Q
    |||||||||| |||||||||||||||||  | |||||||| |||||| ||||||||| ||   | ||| ||||||||||||||||||||    
T  19069864 gcaagagcaagtgacataaaaaagagtgtatcccaactaaattggta-ccaactctattcttatgtcaaatgctcataaatatattatt 19069951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 97
Target Start/End: Original strand, 19117754 - 19117841
Alignment:
Q  12 gcaagagcaaatgacataaaaaagagtggcttccaactaagttggtacccaactctagtc---tctcagatgctcataaatatattatt 97  Q
    |||||||||| |||||||||||||||||  | |||||||| |||||| ||||||||| ||   | ||| ||||||||||||||||||||    
T  19117754 gcaagagcaagtgacataaaaaagagtgtatcccaactaaattggta-ccaactctattcttatgtcaaatgctcataaatatattatt 19117841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 72
Target Start/End: Complemental strand, 5965521 - 5965469
Alignment:
Q  20 aaatgacataaaaaagagtggcttccaactaagttggtacccaactctagtct 72  Q
    ||||||||||||||||| | |  ||||||||||||||||||| | ||||||||    
T  5965521 aaatgacataaaaaagaatagtgtccaactaagttggtaccctattctagtct 5965469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 81; Significance: 4e-38; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 136 - 299
Target Start/End: Original strand, 8067986 - 8068149
Alignment:
Q  136 ggggacataaacctaactagtttatccacaaaatggaggtctacccaaacgggttatatgaaaattaaaaacaacacaggtagattataacatcctctta 235  Q
    ||||||||||||||||| ||||||||||||||||| |||| ||||| ||||||| |||||||||||||||||||||||  |  ||||||||| || ||||    
T  8067986 ggggacataaacctaaccagtttatccacaaaatgtaggtttaccctaacgggtgatatgaaaattaaaaacaacacaaatgaattataacagccactta 8068085  T
Q  236 agtagaggtcta-atcagcggtgaatggaccaaccgtcaacacggagcaattccacgtaccatcc 299  Q
    |||||| ||||| ||| ||||||||||||||| ||||||||| ||||||  ||||| ||||||||    
T  8068086 agtagaagtctagatc-gcggtgaatggaccagccgtcaacatggagcagatccacataccatcc 8068149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 136 - 264
Target Start/End: Complemental strand, 15139288 - 15139160
Alignment:
Q  136 ggggacataaacctaactagtttatccacaaaatggaggtctacccaaacgggttatatgaaaattaaaaacaacacaggtagattataacatcctctta 235  Q
    ||||||||||||||||| |||||||||| ||||||||||| |||||||||||||  |||||||| |||||||||||||  | |||||||||| |||||||    
T  15139288 ggggacataaacctaaccagtttatccataaaatggaggtatacccaaacgggtggtatgaaaactaaaaacaacacaaatggattataacaacctctta 15139189  T
Q  236 agtagaggtctaatcagcggtgaatggac 264  Q
    ||||||| ||||  | |||||||||||||    
T  15139188 agtagagctctagaccgcggtgaatggac 15139160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 142 - 276
Target Start/End: Complemental strand, 34047960 - 34047826
Alignment:
Q  142 ataaacctaactagtttatccacaaaatggaggtctacccaaacgggttatatgaaaattaaaaacaacacaggtagattataacatcctcttaagtaga 241  Q
    ||||||||||| | |||||||||||||||||||| |||||||||||   |||| ||||||||||||||||||  |||||||||| ||  |||||||||||    
T  34047960 ataaacctaaccaatttatccacaaaatggaggtttacccaaacggaaaatattaaaattaaaaacaacacaaatagattataaaattatcttaagtaga 34047861  T
Q  242 ggtctaatcagcggtgaatggaccaaccgtcaaca 276  Q
    ||||||  |  |||||||| |||||||||||||||    
T  34047860 ggtctagactacggtgaatagaccaaccgtcaaca 34047826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 12 - 68
Target Start/End: Complemental strand, 7318661 - 7318605
Alignment:
Q  12 gcaagagcaaatgacataaaaaagagtggcttccaactaagttggtacccaactcta 68  Q
    ||||||| ||||||||||||||||||||||| ||||||||||||||||||| |||||    
T  7318661 gcaagagtaaatgacataaaaaagagtggctcccaactaagttggtacccatctcta 7318605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 12 - 97
Target Start/End: Complemental strand, 15139410 - 15139322
Alignment:
Q  12 gcaagagcaaatgacataaaaaagagtggcttccaactaagttggtacccaactctagtc---tctcagatgctcataaatatattatt 97  Q
    |||||| ||||||||||| ||||||||||||||||||||| ||||| |||||||||| ||   | ||| ||| ||||||||||||||||    
T  15139410 gcaagaacaaatgacatataaaagagtggcttccaactaaattggtccccaactctaatcttttgtcaaatgttcataaatatattatt 15139322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 49 - 97
Target Start/End: Complemental strand, 34048046 - 34047998
Alignment:
Q  49 taagttggtacccaactctagtctctcagatgctcataaatatattatt 97  Q
    ||||| |||||||||||||| | | ||||||||||||||||||||||||    
T  34048046 taagtcggtacccaactctaatttgtcagatgctcataaatatattatt 34047998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 140 - 207
Target Start/End: Complemental strand, 25141653 - 25141586
Alignment:
Q  140 acataaacctaactagtttatccacaaaatggaggtctacccaaacgggttatatgaaaattaaaaac 207  Q
    ||||||| ||||| |||||||  ||||||||||  ||||||||||||| | |||||||| ||||||||    
T  25141653 acataaatctaaccagtttattaacaaaatggaaatctacccaaacggataatatgaaagttaaaaac 25141586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 58; Significance: 2e-24; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 136 - 213
Target Start/End: Original strand, 17230699 - 17230776
Alignment:
Q  136 ggggacataaacctaactagtttatccacaaaatggaggtctacccaaacgggttatatgaaaattaaaaacaacaca 213  Q
    ||||||||||||||||| |||||||||||||||||||| | ||||||||||| | |||||||||||||||||||||||    
T  17230699 ggggacataaacctaaccagtttatccacaaaatggagttttacccaaacggataatatgaaaattaaaaacaacaca 17230776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 12 - 97
Target Start/End: Original strand, 17230579 - 17230664
Alignment:
Q  12 gcaagagcaaatgacataaaaaagagtggcttccaactaagttggtacccaactctagtctctcagatgctcataaatatattatt 97  Q
    |||||| |||||||||||||||||||||||| ||||  ||||||||||| ||||||| | | ||||||||| ||||||||||||||    
T  17230579 gcaagaacaaatgacataaaaaagagtggctcccaatgaagttggtacctaactctaatatgtcagatgcttataaatatattatt 17230664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 20 - 68
Target Start/End: Original strand, 6363281 - 6363329
Alignment:
Q  20 aaatgacataaaaaagagtggcttccaactaagttggtacccaactcta 68  Q
    ||||||||||||||||||||||| |||||||||||||||||| ||||||    
T  6363281 aaatgacataaaaaagagtggctcccaactaagttggtacccgactcta 6363329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 20 - 68
Target Start/End: Original strand, 32717514 - 32717562
Alignment:
Q  20 aaatgacataaaaaagagtggcttccaactaagttggtacccaactcta 68  Q
    ||||||||||||||||||||||| |||||||||||||||||| ||||||    
T  32717514 aaatgacataaaaaagagtggctcccaactaagttggtaccctactcta 32717562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 12 - 68
Target Start/End: Complemental strand, 11991022 - 11990967
Alignment:
Q  12 gcaagagcaaatgacataaaaaagagtggcttccaactaagttggtacccaactcta 68  Q
    ||||||||||| ||||||||| ||||||||| ||||||||||||||| |||||||||    
T  11991022 gcaagagcaaa-gacataaaatagagtggctcccaactaagttggtatccaactcta 11990967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 12 - 68
Target Start/End: Original strand, 17197380 - 17197436
Alignment:
Q  12 gcaagagcaaat-gacataaaaaagagtggcttccaactaagttggtacccaactcta 68  Q
    |||||||||||| ||||||||||||||||| |||||||||||| ||||||| ||||||    
T  17197380 gcaagagcaaattgacataaaaaagagtgg-ttccaactaagtcggtaccctactcta 17197436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 60
Target Start/End: Complemental strand, 1290555 - 1290515
Alignment:
Q  20 aaatgacataaaaaagagtggcttccaactaagttggtacc 60  Q
    ||||||||| ||| |||| ||||||||||||||||||||||    
T  1290555 aaatgacatcaaacagagaggcttccaactaagttggtacc 1290515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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