View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1715_low_119 (Length: 316)
Name: NF1715_low_119
Description: NF1715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1715_low_119 |
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Alignment Details
Target: chr4 (Bit Score: 185; Significance: 1e-100; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 65 - 302
Target Start/End: Complemental strand, 49018130 - 49017890
Alignment:
| Q |
65 |
ttggaagtacgaacttgcataccaacatatcaaatgtcattgtataaaatgtttatgcgttcttctactctttgaactactgttacaacacattatca-t |
163 |
Q |
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| T |
49018130 |
ttggaagtacgaacttgcacaccaacatatcaaatgtcattgtataaaatgtttatgcgttcttgtactctttgaactacgcttacaacacattatcact |
49018031 |
T |
|
| Q |
164 |
tattatta-gaaaaatagtaacaaatatctttaaagt-attgtttaagtatttaaaagttgtaaattttatattttgaagacaaaatttatttttataga |
261 |
Q |
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| T |
49018030 |
tattattaagaaaaatagtaacaaatatcttcagggttattatttaagtatttaaaagttgtaaattttatattttgaagacaaaatttatttttataga |
49017931 |
T |
|
| Q |
262 |
ttccttaaaacatttgttagcaagatgtttattattgttaa |
302 |
Q |
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| T |
49017930 |
ttccttaaaacatttgttagcaagatgtttattattgttaa |
49017890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 6 - 43
Target Start/End: Complemental strand, 49018152 - 49018115
Alignment:
| Q |
6 |
cacagagaagagaagaaggatattgaaagtacgaactt |
43 |
Q |
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| T |
49018152 |
cacagagaagagaagaaggatattggaagtacgaactt |
49018115 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 229 - 270
Target Start/End: Complemental strand, 49013847 - 49013806
Alignment:
| Q |
229 |
ttatattttgaagacaaaatttatttttatagattccttaaa |
270 |
Q |
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| T |
49013847 |
ttatattttcaagacaaaatttatttttataggatccttaaa |
49013806 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 168 - 232
Target Start/End: Original strand, 3527656 - 3527720
Alignment:
| Q |
168 |
attagaaaaatagtaacaaatatctttaaagtattgtttaagtatttaaaagttgtaaattttat |
232 |
Q |
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| T |
3527656 |
attaggaaaatggtaacaaatatccttaaagcattgtttaagtatataaaagtagtaacttttat |
3527720 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 229 - 270
Target Start/End: Complemental strand, 28108729 - 28108688
Alignment:
| Q |
229 |
ttatattttgaagacaaaatttatttttatagattccttaaa |
270 |
Q |
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|
| T |
28108729 |
ttatattttcaagacaaaatttacatttatagattccttaaa |
28108688 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 224 - 269
Target Start/End: Original strand, 33621433 - 33621478
Alignment:
| Q |
224 |
aaattttatattttgaagacaaaatttatttttatagattccttaa |
269 |
Q |
| |
|
|||||||||||||| |||||||||||| | ||| |||||||||||| |
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|
| T |
33621433 |
aaattttatatttttaagacaaaatttttatttgtagattccttaa |
33621478 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 229 - 269
Target Start/End: Complemental strand, 34993139 - 34993099
Alignment:
| Q |
229 |
ttatattttgaagacaaaatttatttttatagattccttaa |
269 |
Q |
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||||||||| |||||||||||||| ||| |||||||||||| |
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| T |
34993139 |
ttatattttcaagacaaaatttatatttgtagattccttaa |
34993099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 213 - 257
Target Start/End: Complemental strand, 15528416 - 15528372
Alignment:
| Q |
213 |
ttaaaagttgtaaattttatattttgaagacaaaatttattttta |
257 |
Q |
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|||||||||||||| ||||||||| || |||||||||||||||| |
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| T |
15528416 |
ttaaaagttgtaaaagttatattttcaacacaaaatttattttta |
15528372 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 229 - 269
Target Start/End: Original strand, 6102900 - 6102940
Alignment:
| Q |
229 |
ttatattttgaagacaaaatttatttttatagattccttaa |
269 |
Q |
| |
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|||||||||||||||||| ||| | |||||||||||||||| |
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| T |
6102900 |
ttatattttgaagacaaattttctatttatagattccttaa |
6102940 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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