View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1715_low_12 (Length: 588)
Name: NF1715_low_12
Description: NF1715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1715_low_12 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 550; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 550; E-Value: 0
Query Start/End: Original strand, 19 - 576
Target Start/End: Complemental strand, 28530827 - 28530270
Alignment:
| Q |
19 |
gatactccccttgatctcaactataagcaaaaacgtcaaacaaagtagatgtatctgattcaaatttttaaccatacattaattttgcttgacttatatt |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28530827 |
gatactccccttgatctcaactataagcaaaaacgtcaaacaaagtagatgtatctgattcaaatttttaaccatacattaattttgcttgacttatatt |
28530728 |
T |
|
| Q |
119 |
tgcttatatttaagaccggagtagtaattatgtgaattaagaaacgtagtatttgattaattcccttctttattttgtaaatgctaattccttaccagga |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28530727 |
tgcttatatttaagaccggagtagtaattatgtgaattaagaaacgtagtatttgattaattcccttctttattttgtaaatgctaattccttaccagga |
28530628 |
T |
|
| Q |
219 |
ttgaaattgtcggttgcagcaacaagatcttcataactaaagtttctccaagaaggctttgtaataccatcaagatcaaaagcagcatcaaaaatattct |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28530627 |
ttgaaattgtcggttgcagcaacaagatcttcataactaaagtttctccaagaaggctttgtaataccatcaagatcaaaagcagcatcaaaaatattct |
28530528 |
T |
|
| Q |
319 |
catcttcatcgttagctgttcttttacgagccaacttgttcctcaaattcttcctagaaatttcataactagcagcaagcaaaggaatggtagaaaatct |
418 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
28530527 |
catcttcatcgttagctgttcttttacgagccaacttgttcctcaaattcttcctagaaatttcataactagcagcaagcaaaggaatgctagaaaatct |
28530428 |
T |
|
| Q |
419 |
cctcacagacttaaacctcaatgcatcaatcatagccttccattggtgccctccatctcctcctcctggtgatgatggtttacctccattgctgtagttg |
518 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28530427 |
cctcacagacttaaacctcaatgcatcaatcatagccttccattggtgccctccatctcctcctcctggtgatgatggtttacctccattgctgtagttg |
28530328 |
T |
|
| Q |
519 |
ctgctccccgtgctgtcggaatctgaaataggtacctcaaatacacctcttggtgatg |
576 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
28530327 |
ctgctccccgtgctgtcggaatccgaaataggtacctcaaatacacctcttggtgatg |
28530270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 53 - 86
Target Start/End: Complemental strand, 32522549 - 32522516
Alignment:
| Q |
53 |
gtcaaacaaagtagatgtatctgattcaaatttt |
86 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||| |
|
|
| T |
32522549 |
gtcaaacaaagttgatgtatctgattcaaatttt |
32522516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 107 - 147
Target Start/End: Original strand, 32332551 - 32332591
Alignment:
| Q |
107 |
ttgacttatatttgcttatatttaagaccggagtagtaatt |
147 |
Q |
| |
|
||||||||| |||| |||||||| ||||||||||||||||| |
|
|
| T |
32332551 |
ttgacttatttttgtttatatttgagaccggagtagtaatt |
32332591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University