View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1715_low_123 (Length: 314)

Name: NF1715_low_123
Description: NF1715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1715_low_123
NF1715_low_123
[»] chr5 (9 HSPs)
chr5 (14-300)||(14389771-14390057)
chr5 (192-300)||(16022266-16022374)
chr5 (244-300)||(13856716-13856772)
chr5 (85-128)||(14358585-14358628)
chr5 (51-128)||(14397840-14397918)
chr5 (235-300)||(13881387-13881452)
chr5 (80-128)||(13857615-13857663)
chr5 (54-128)||(13866107-13866182)
chr5 (90-128)||(14391588-14391626)
[»] chr3 (1 HSPs)
chr3 (244-296)||(48707327-48707379)


Alignment Details
Target: chr5 (Bit Score: 262; Significance: 1e-146; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 14 - 300
Target Start/End: Complemental strand, 14390057 - 14389771
Alignment:
Q  14 aaaatataagaacagaattttagaaacacaaccggtgcataataagaaatcatactctaatcagtgcaggaatcagcaatatgtgcaaaatcacaacatt 113  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14390057 aaaatataagaacagaattttagaaacacaaccagtgcataataagaaatcatactctaatcagtgcaggaatcagcaatatgtgcaaaatcacaacatt 14389958  T
Q  114 aggcttgtttatgaaaagaatttcatacatagnnnnnnntcactgtgaagataggcttaaaaattggatccatcatcgacacagtagtcacttcatgctt 213  Q
    ||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14389957 aggcttgtttatgaaaagaatttcatacatagaaaaaaatcactgtgaagataggcttaaaaattggatccatcatcgacacagtagtcacttcatgctt 14389858  T
Q  214 ttcatttccaaaatcaatgaattgaatagaaagtgtctttggttttggtgactgcaataaaataaaccatgttacaaaacatataac 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14389857 ttcatttccaaaatcaatgaattgaatagaaagtgtctttggttttggtgactgcaataaaataaaccatgttacaaaacatataac 14389771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 192 - 300
Target Start/End: Original strand, 16022266 - 16022374
Alignment:
Q  192 acacagtagtcacttcatgcttttcatttccaaaatcaatgaattgaatagaaagtgtctttggttttggtgactgcaataaaataaaccatgttacaaa 291  Q
    |||||| ||||||||||||||| ||||||||| | || |||| ||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| |    
T  16022266 acacagcagtcacttcatgcttctcatttccacagtccatgagttgaatagacagtgtctttggttttggtgactgcaatgaaataaaccatgttacaga 16022365  T
Q  292 acatataac 300  Q
    |||||||||    
T  16022366 acatataac 16022374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 244 - 300
Target Start/End: Original strand, 13856716 - 13856772
Alignment:
Q  244 aagtgtctttggttttggtgactgcaataaaataaaccatgttacaaaacatataac 300  Q
    |||||||||| |||||||| ||||| || |||||||||||||||| |||||||||||    
T  13856716 aagtgtctttagttttggtaactgctatgaaataaaccatgttaccaaacatataac 13856772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 85 - 128
Target Start/End: Original strand, 14358585 - 14358628
Alignment:
Q  85 atcagcaatatgtgcaaaatcacaacattaggcttgtttatgaa 128  Q
    ||||||||||| ||||||| ||||||||||||||||||||||||    
T  14358585 atcagcaatatttgcaaaagcacaacattaggcttgtttatgaa 14358628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 51 - 128
Target Start/End: Complemental strand, 14397918 - 14397840
Alignment:
Q  51 cataataagaaatcatactctaatc-agtgcaggaatcagcaatatgtgcaaaatcacaacattaggcttgtttatgaa 128  Q
    ||||||| || ||||||||| || | |||||||  |||| |||||||| |||||||||||||||| |||||||||||||    
T  14397918 cataataggacatcatactcaaacccagtgcagctatcaacaatatgtacaaaatcacaacattaagcttgtttatgaa 14397840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 235 - 300
Target Start/End: Original strand, 13881387 - 13881452
Alignment:
Q  235 ttgaatagaaagtgtctttggttttggtgactgcaataaaataaaccatgttacaaaacatataac 300  Q
    ||||||||| || ||||||||||| ||  ||||| |  ||||||||||||||||||||||||||||    
T  13881387 ttgaatagacagcgtctttggtttaggacactgcgaggaaataaaccatgttacaaaacatataac 13881452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 80 - 128
Target Start/End: Original strand, 13857615 - 13857663
Alignment:
Q  80 caggaatcagcaatatgtgcaaaatcacaacattaggcttgtttatgaa 128  Q
    |||| |||| |||| ||||||||||||| ||||||||||||||||||||    
T  13857615 caggtatcaacaatgtgtgcaaaatcacgacattaggcttgtttatgaa 13857663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 54 - 128
Target Start/End: Original strand, 13866107 - 13866182
Alignment:
Q  54 aataagaaatcatactctaat-cagtgcaggaatcagcaatatgtgcaaaatcacaacattaggcttgtttatgaa 128  Q
    ||||||||||||| ||||||| || | |||| ||||||||| || |||||||||| ||||| ||| ||||||||||    
T  13866107 aataagaaatcattctctaatccaattcaggtatcagcaatgtgcgcaaaatcacgacattgggcctgtttatgaa 13866182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 90 - 128
Target Start/End: Complemental strand, 14391626 - 14391588
Alignment:
Q  90 caatatgtgcaaaatcacaacattaggcttgtttatgaa 128  Q
    |||||||| ||||||||| ||||||||||||||||||||    
T  14391626 caatatgtacaaaatcactacattaggcttgtttatgaa 14391588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 244 - 296
Target Start/End: Complemental strand, 48707379 - 48707327
Alignment:
Q  244 aagtgtctttggttttggtgactgcaataaaataaaccatgttacaaaacata 296  Q
    |||||||||||||||| ||||||||||| ||||||||||||||||| ||||||    
T  48707379 aagtgtctttggttttcgtgactgcaatgaaataaaccatgttacataacata 48707327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University