View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1715_low_125 (Length: 311)
Name: NF1715_low_125
Description: NF1715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1715_low_125 |
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Alignment Details
Target: chr8 (Bit Score: 269; Significance: 1e-150; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 27 - 303
Target Start/End: Original strand, 41673403 - 41673679
Alignment:
| Q |
27 |
ttatggactaaacaacacacgtgattaaaagggatacttaattcaaattacataaaccaataatccagatccttttcttaatttatttgcttctagcaat |
126 |
Q |
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| T |
41673403 |
ttatggactaaacaacacacatgattaaaagggatacttaattcaaattacataaaacaataatccagatccttttcttaatttatttgcttctagcaat |
41673502 |
T |
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| Q |
127 |
tgagacttaatttcacatatcaccagcactcaaagaacttaatctcaacacgaagtcgaaaatagacctcaccttcaaaagcatcagtcataatagtagc |
226 |
Q |
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| T |
41673503 |
tgagacttaatttcacatatcaccagcactcaaagaacttaatctcaacacgaagtcgaaaatagacctcaccttcaaaagcatcagtcataatagtagc |
41673602 |
T |
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| Q |
227 |
aattcctctatgcataaagaaatctccagtgccaccagttacagagatatctctacttttctgcataattgggtcag |
303 |
Q |
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| T |
41673603 |
aattcctctatgcataaagaaatctccagtgccaccagttacagagatatctctacttttctgcataattgggtcag |
41673679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 148 - 224
Target Start/End: Original strand, 27147117 - 27147193
Alignment:
| Q |
148 |
accagcactcaaagaacttaatctcaacacgaagtcgaaaatagacctcaccttcaaaagcatcagtcataatagta |
224 |
Q |
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| T |
27147117 |
accaacactcgaaaaacttaatatcaacacaaaatcgaaaataaacctcgccttcaaatgcatcggtcataatagta |
27147193 |
T |
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