View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1715_low_126 (Length: 310)
Name: NF1715_low_126
Description: NF1715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1715_low_126 |
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Alignment Details
Target: chr2 (Bit Score: 209; Significance: 1e-114; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 13 - 295
Target Start/End: Original strand, 13644146 - 13644429
Alignment:
| Q |
13 |
aatatcaaagatcgaggcatgagaacactatccttaattatgcttgttcaacnnnnnnnnnnnncactatccttattgtgactatagtttaaaacgttaa |
112 |
Q |
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| T |
13644146 |
aatatcaaagatcgaggcatgagaacactatccttaattatgcttgttcaacaaaaaaaaaaaacactatccttattgtgactatagtttaaaacgttaa |
13644245 |
T |
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| Q |
113 |
tgatatataatgatttcaggatgatgatgataaagatgaagcgaactacctgtccaaggcttcaaaatacttctgcttcctaatctcaaagaacatatca |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13644246 |
tgatatataatgatttcaggatgatgatgataaagatgaagagaactacctgtccaaggcttcaaaatacttctgcttcctaatctcaaagaacatatca |
13644345 |
T |
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| Q |
213 |
atcgaatgtcgattatta-nnnnnnnnnatagtagacccattgacatatttctcacactcatccaaatccccagcaaggatctt |
295 |
Q |
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| T |
13644346 |
atcgaatgtcgattattattatttttttatagtagacccattgacatatttctcacactcatccaaatccccagcaaggatctt |
13644429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 157 - 208
Target Start/End: Original strand, 13634843 - 13634894
Alignment:
| Q |
157 |
actacctgtccaaggcttcaaaatacttctgcttcctaatctcaaagaacat |
208 |
Q |
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| T |
13634843 |
actacctgtccaaggcttcaagatacttttgcttcctaatctcaaagaacat |
13634894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 157 - 208
Target Start/End: Complemental strand, 27532236 - 27532185
Alignment:
| Q |
157 |
actacctgtccaaggcttcaaaatacttctgcttcctaatctcaaagaacat |
208 |
Q |
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| T |
27532236 |
actacctgtccaaggcttccaaatacttctgcttcctaatctgaaaaaacat |
27532185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 165 - 205
Target Start/End: Original strand, 47414833 - 47414873
Alignment:
| Q |
165 |
tccaaggcttcaaaatacttctgcttcctaatctcaaagaa |
205 |
Q |
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| T |
47414833 |
tccaacgcttcaagatacttctgcttcctaatctcgaagaa |
47414873 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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