View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1715_low_128 (Length: 309)
Name: NF1715_low_128
Description: NF1715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1715_low_128 |
 | |
|
| [»] scaffold0055 (8 HSPs) |
| | |
|
| [»] scaffold0052 (9 HSPs) |
| | |
|
| [»] scaffold0021 (1 HSPs) |
| | |
|
| [»] scaffold0515 (1 HSPs) |
| | |
|
| [»] scaffold0306 (1 HSPs) |
| | |
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| [»] scaffold0152 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0055 (Bit Score: 271; Significance: 1e-151; HSPs: 8)
Name: scaffold0055
Description:
Target: scaffold0055; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 23 - 293
Target Start/End: Complemental strand, 41654 - 41384
Alignment:
| Q |
23 |
agcgatttgtctggttaattccgttaacgaacgagacctcagcctgctaaatagctatgtggaggtaaccctccacggccagcttcttagagggactatg |
122 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41654 |
agcgatttgtctggttaattccgttaacgaacgagacctcagcctgctaaatagctatgtggaggtaaccctccacggccagcttcttagagggactatg |
41555 |
T |
|
| Q |
123 |
gccgcttaggccacggaagtttgaggcaataacaggtctgtgatgcccttagatgttctgggccgcacgcgcgctacactgatgtattcaacgagtctat |
222 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41554 |
gccgcttaggccacggaagtttgaggcaataacaggtctgtgatgcccttagatgttctgggccgcacgcgcgctacactgatgtattcaacgagtctat |
41455 |
T |
|
| Q |
223 |
agccttggccgacaggcccgggtaatctttgaaatttcatcgtgatggggatagatcattgcaattgttgg |
293 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41454 |
agccttggccgacaggcccgggtaatctttgaaatttcatcgtgatggggatagatcattgcaattgttgg |
41384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0055; HSP #2
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 23 - 293
Target Start/End: Original strand, 71731 - 72001
Alignment:
| Q |
23 |
agcgatttgtctggttaattccgttaacgaacgagacctcagcctgctaaatagctatgtggaggtaaccctccacggccagcttcttagagggactatg |
122 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
71731 |
agcgatttgtctggttaattccgttaacgaacgagacctcagcctgctaaatagctatgtggaggtaaccctccacggccagcttcttagagggactatg |
71830 |
T |
|
| Q |
123 |
gccgcttaggccacggaagtttgaggcaataacaggtctgtgatgcccttagatgttctgggccgcacgcgcgctacactgatgtattcaacgagtctat |
222 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
71831 |
gccgcttaggccacggaagtttgaggcaataacaggtctgtgatgcccttagatgttctgggccgcacgcgcgctacactgatgtattcaacgagtctat |
71930 |
T |
|
| Q |
223 |
agccttggccgacaggcccgggtaatctttgaaatttcatcgtgatggggatagatcattgcaattgttgg |
293 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
71931 |
agccttggccgacaggcccgggtaatctttgaaatttcatcgtgatggggatagatcattgcaattgttgg |
72001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0055; HSP #3
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 23 - 293
Target Start/End: Complemental strand, 79903 - 79633
Alignment:
| Q |
23 |
agcgatttgtctggttaattccgttaacgaacgagacctcagcctgctaaatagctatgtggaggtaaccctccacggccagcttcttagagggactatg |
122 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
79903 |
agcgatttgtctggttaattccgttaacgaacgagacctcagcctgctaaatagctatgtggaggtaaccctccacggccagcttcttagagggactatg |
79804 |
T |
|
| Q |
123 |
gccgcttaggccacggaagtttgaggcaataacaggtctgtgatgcccttagatgttctgggccgcacgcgcgctacactgatgtattcaacgagtctat |
222 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
79803 |
gccgcttaggccacggaagtttgaggcaataacaggtctgtgatgcccttagatgttctgggccgcacgcgcgctacactgatgtattcaacgagtctat |
79704 |
T |
|
| Q |
223 |
agccttggccgacaggcccgggtaatctttgaaatttcatcgtgatggggatagatcattgcaattgttgg |
293 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
79703 |
agccttggccgacaggcccgggtaatctttgaaatttcatcgtgatggggatagatcattgcaattgttgg |
79633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0055; HSP #4
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 23 - 293
Target Start/End: Complemental strand, 50902 - 50632
Alignment:
| Q |
23 |
agcgatttgtctggttaattccgttaacgaacgagacctcagcctgctaaatagctatgtggaggtaaccctccacggccagcttcttagagggactatg |
122 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50902 |
agcgatttgtctggttaattccgttaacgaacgagacctcagcctgctaaatagctatgtggaggtaaccctccacggccagcttcttagagggactatg |
50803 |
T |
|
| Q |
123 |
gccgcttaggccacggaagtttgaggcaataacaggtctgtgatgcccttagatgttctgggccgcacgcgcgctacactgatgtattcaacgagtctat |
222 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50802 |
gccgcttaggccatggaagtttgaggcaataacaggtctgtgatgcccttagatgttctgggccgcacgcgcgctacactgatgtattcaacgagtctat |
50703 |
T |
|
| Q |
223 |
agccttggccgacaggcccgggtaatctttgaaatttcatcgtgatggggatagatcattgcaattgttgg |
293 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50702 |
agccttggccgacaggcccgggtaatctttgaaatttcatcgtgatggggatagatcattgcaattgttgg |
50632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0055; HSP #5
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 23 - 293
Target Start/End: Complemental strand, 32340 - 32070
Alignment:
| Q |
23 |
agcgatttgtctggttaattccgttaacgaacgagacctcagcctgctaaatagctatgtggaggtaaccctccacggccagcttcttagagggactatg |
122 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
32340 |
agcgatttgtctggttaattccgttaatgaacgagacctcagcctgctaaatagctatgtggaggtaaccctccacggccagcttcttagaaggactatg |
32241 |
T |
|
| Q |
123 |
gccgcttaggccacggaagtttgaggcaataacaggtctgtgatgcccttagatgttctgggccgcacgcgcgctacactgatgtattcaacgagtctat |
222 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32240 |
gccgcttaggccacggaagtttgaggcaataacaggtctgtgatgcccttagatgttctgggccgcacgcgcgctacactgatgtattcaacgagtctat |
32141 |
T |
|
| Q |
223 |
agccttggccgacaggcccgggtaatctttgaaatttcatcgtgatggggatagatcattgcaattgttgg |
293 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32140 |
agccttggccgacaggcccgggtaatctttgaaatttcatcgtgatggggatagatcattgcaattgttgg |
32070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0055; HSP #6
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 23 - 293
Target Start/End: Complemental strand, 66525 - 66255
Alignment:
| Q |
23 |
agcgatttgtctggttaattccgttaacgaacgagacctcagcctgctaaatagctatgtggaggtaaccctccacggccagcttcttagagggactatg |
122 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
66525 |
agcgatttgtctggttaattccgttaacgaacgagacctcagcctgctaaatagctatgtggaggtaaccctccacggccagcttcttagagggactatg |
66426 |
T |
|
| Q |
123 |
gccgcttaggccacggaagtttgaggcaataacaggtctgtgatgcccttagatgttctgggccgcacgcgcgctacactgatgtattcaacgagtctat |
222 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
66425 |
gccgcttaggccacggaagtttgaggcaataacaggtctgtgatgcccttagatgttctgggccgcacgcgcgctacactgatgtattcaacgagtctat |
66326 |
T |
|
| Q |
223 |
agccttggccgacaggcccgggtaatctttgaaatttcatcgtgatggggatagatcattgcaattgttgg |
293 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
66325 |
agccttggccgacaggcccgggtaatctttgaaatttcatcgtgatgaagatagatcattgcaattgttgg |
66255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0055; HSP #7
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 23 - 292
Target Start/End: Complemental strand, 69357 - 69088
Alignment:
| Q |
23 |
agcgatttgtctggttaattccgttaacgaacgagacctcagcctgctaaatagctatgtggaggtaaccctccacggccagcttcttagagggactatg |
122 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
69357 |
agcgatttgtctggttaattccgttaacgaacgagacctcagcctgctaaatagctatgtggaggtaaccctccacggccagcttcttagagggactatg |
69258 |
T |
|
| Q |
123 |
gccgcttaggccacggaagtttgaggcaataacaggtctgtgatgcccttagatgttctgggccgcacgcgcgctacactgatgtattcaacgagtctat |
222 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
69257 |
gccgcttaggccacggaagtttgaggcaataacaggtctgtgatgcccttagatgttctgggccgcacgcgcgctacactgatgtattcaacgagtctat |
69158 |
T |
|
| Q |
223 |
agccttggccgacaggcccgggtaatctttgaaatttcatcgtgatggggatagatcattgcaattgttg |
292 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
69157 |
agccttggccgacaggcccgggtaatctttgaaatttcatcgtgatgaagatagatcattgcaattgttg |
69088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0055; HSP #8
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 23 - 115
Target Start/End: Original strand, 4779 - 4871
Alignment:
| Q |
23 |
agcgatttgtctggttaattccgttaacgaacgagacctcagcctgctaaatagctatgtggaggtaaccctccacggccagcttcttagagg |
115 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4779 |
agcgatttgtctagttaattccgttaacgaacgagacctcagcctgctaaatagctatgtggaggtaaccctccacggccagcttcttagagg |
4871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0052 (Bit Score: 271; Significance: 1e-151; HSPs: 9)
Name: scaffold0052
Description:
Target: scaffold0052; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 23 - 293
Target Start/End: Complemental strand, 6257 - 5987
Alignment:
| Q |
23 |
agcgatttgtctggttaattccgttaacgaacgagacctcagcctgctaaatagctatgtggaggtaaccctccacggccagcttcttagagggactatg |
122 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6257 |
agcgatttgtctggttaattccgttaacgaacgagacctcagcctgctaaatagctatgtggaggtaaccctccacggccagcttcttagagggactatg |
6158 |
T |
|
| Q |
123 |
gccgcttaggccacggaagtttgaggcaataacaggtctgtgatgcccttagatgttctgggccgcacgcgcgctacactgatgtattcaacgagtctat |
222 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6157 |
gccgcttaggccacggaagtttgaggcaataacaggtctgtgatgcccttagatgttctgggccgcacgcgcgctacactgatgtattcaacgagtctat |
6058 |
T |
|
| Q |
223 |
agccttggccgacaggcccgggtaatctttgaaatttcatcgtgatggggatagatcattgcaattgttgg |
293 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6057 |
agccttggccgacaggcccgggtaatctttgaaatttcatcgtgatggggatagatcattgcaattgttgg |
5987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0052; HSP #2
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 23 - 293
Target Start/End: Complemental strand, 27289 - 27019
Alignment:
| Q |
23 |
agcgatttgtctggttaattccgttaacgaacgagacctcagcctgctaaatagctatgtggaggtaaccctccacggccagcttcttagagggactatg |
122 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27289 |
agcgatttgtctggttaattccgttaacgaacgagacctcagcctgctaaatagctatgtggaggtaaccctccacggccagcttcttagagggactatg |
27190 |
T |
|
| Q |
123 |
gccgcttaggccacggaagtttgaggcaataacaggtctgtgatgcccttagatgttctgggccgcacgcgcgctacactgatgtattcaacgagtctat |
222 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27189 |
gccgcttaggccacggaagtttgaggcaataacaggtctgtgatgcccttagatgttctgggccgcacgcgcgctacactgatgtattcaacgagtctat |
27090 |
T |
|
| Q |
223 |
agccttggccgacaggcccgggtaatctttgaaatttcatcgtgatggggatagatcattgcaattgttgg |
293 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27089 |
agccttggccgacaggcccgggtaatctttgaaatttcatcgtgatggggatagatcattgcaattgttgg |
27019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0052; HSP #3
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 23 - 293
Target Start/End: Complemental strand, 47809 - 47539
Alignment:
| Q |
23 |
agcgatttgtctggttaattccgttaacgaacgagacctcagcctgctaaatagctatgtggaggtaaccctccacggccagcttcttagagggactatg |
122 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47809 |
agcgatttgtctggttaattccgttaacgaacgagacctcagcctgctaaatagctatgtggaggtaaccctccacggccagcttcttagagggactatg |
47710 |
T |
|
| Q |
123 |
gccgcttaggccacggaagtttgaggcaataacaggtctgtgatgcccttagatgttctgggccgcacgcgcgctacactgatgtattcaacgagtctat |
222 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47709 |
gccgcttaggccacggaagtttgaggcaataacaggtctgtgatgcccttagatgttctgggccgcacgcgcgctacactgatgtattcaacgagtctat |
47610 |
T |
|
| Q |
223 |
agccttggccgacaggcccgggtaatctttgaaatttcatcgtgatggggatagatcattgcaattgttgg |
293 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47609 |
agccttggccgacaggcccgggtaatctttgaaatttcatcgtgatggggatagatcattgcaattgttgg |
47539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0052; HSP #4
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 23 - 293
Target Start/End: Complemental strand, 25427 - 25157
Alignment:
| Q |
23 |
agcgatttgtctggttaattccgttaacgaacgagacctcagcctgctaaatagctatgtggaggtaaccctccacggccagcttcttagagggactatg |
122 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25427 |
agcgatttgtctggttaattccgttaacgaacgagacctcagcctgctaaatagctatgtggaggtaaccctccacggccagcttcttagagggactatg |
25328 |
T |
|
| Q |
123 |
gccgcttaggccacggaagtttgaggcaataacaggtctgtgatgcccttagatgttctgggccgcacgcgcgctacactgatgtattcaacgagtctat |
222 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25327 |
gccgcttaggccatggaagtttgaggcaataacaggtctgtgatgcccttagatgttctgggccgcacgcgcgctacactgatgtattcaacgagtctat |
25228 |
T |
|
| Q |
223 |
agccttggccgacaggcccgggtaatctttgaaatttcatcgtgatggggatagatcattgcaattgttgg |
293 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25227 |
agccttggccgacaggcccgggtaatctttgaaatttcatcgtgatggggatagatcattgcaattgttgg |
25157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0052; HSP #5
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 23 - 293
Target Start/End: Original strand, 35403 - 35673
Alignment:
| Q |
23 |
agcgatttgtctggttaattccgttaacgaacgagacctcagcctgctaaatagctatgtggaggtaaccctccacggccagcttcttagagggactatg |
122 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35403 |
agcgatttgtctggttaattccgttaacgaacgagacctcagcctgctaaatagctatgtggaggtaaccctccacggccagcttcttagagggactatg |
35502 |
T |
|
| Q |
123 |
gccgcttaggccacggaagtttgaggcaataacaggtctgtgatgcccttagatgttctgggccgcacgcgcgctacactgatgtattcaacgagtctat |
222 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35503 |
gccgcttaggccacggaagtttgaggcaataacaggtctgtgatgcccttagatgttctgggccgcacgcgcgctacactgatgtattcaacgagtctat |
35602 |
T |
|
| Q |
223 |
agccttggccgacaggcccgggtaatctttgaaatttcatcgtgatggggatagatcattgcaattgttgg |
293 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
35603 |
agccttggccgacaggcccgggtaatctttgaaatttcatcgtgatgaagatagatcattgcaattgttgg |
35673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0052; HSP #6
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 23 - 293
Target Start/End: Original strand, 63725 - 63995
Alignment:
| Q |
23 |
agcgatttgtctggttaattccgttaacgaacgagacctcagcctgctaaatagctatgtggaggtaaccctccacggccagcttcttagagggactatg |
122 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
63725 |
agcgatttgtctggttaattccgttaatgaacgagacctcagcctgctaaatagctatgtggaggtaaccctccacggccagcttcttagaaggactatg |
63824 |
T |
|
| Q |
123 |
gccgcttaggccacggaagtttgaggcaataacaggtctgtgatgcccttagatgttctgggccgcacgcgcgctacactgatgtattcaacgagtctat |
222 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
63825 |
gccgcttaggccacggaagtttgaggcaataacaggtctgtgatgcccttagatgttctgggccgcacgcgcgctacactgatgtattcaacgagtctat |
63924 |
T |
|
| Q |
223 |
agccttggccgacaggcccgggtaatctttgaaatttcatcgtgatggggatagatcattgcaattgttgg |
293 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
63925 |
agccttggccgacaggcccgggtaatctttgaaatttcatcgtgatggggatagatcattgcaattgttgg |
63995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0052; HSP #7
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 51 - 293
Target Start/End: Original strand, 30577 - 30819
Alignment:
| Q |
51 |
gaacgagacctcagcctgctaaatagctatgtggaggtaaccctccacggccagcttcttagagggactatggccgcttaggccacggaagtttgaggca |
150 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
30577 |
gaacgagacctcagcctgctaaatagctatgtggaggtaaccctccacggccagcttcttagagggactatggccgcttaggccatggaagtttgaggca |
30676 |
T |
|
| Q |
151 |
ataacaggtctgtgatgcccttagatgttctgggccgcacgcgcgctacactgatgtattcaacgagtctatagccttggccgacaggcccgggtaatct |
250 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30677 |
ataacaggtctgtgatgcccttagatgttctgggccgcacgcgcgctacactgatgtattcaacgagtctatagccttggccgacaggcccgggtaatct |
30776 |
T |
|
| Q |
251 |
ttgaaatttcatcgtgatggggatagatcattgcaattgttgg |
293 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30777 |
ttgaaatttcatcgtgatggggatagatcattgcaattgttgg |
30819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0052; HSP #8
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 61 - 223
Target Start/End: Complemental strand, 42351 - 42189
Alignment:
| Q |
61 |
tcagcctgctaaatagctatgtggaggtaaccctccacggccagcttcttagagggactatggccgcttaggccacggaagtttgaggcaataacaggtc |
160 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42351 |
tcagcctgctaaatagctatgtggaggtaaccctccacggccagctttttagagggactatggccgcttaggccacggaagtttgaggcaataacaggtc |
42252 |
T |
|
| Q |
161 |
tgtgatgcccttagatgttctgggccgcacgcgcgctacactgatgtattcaacgagtctata |
223 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
42251 |
tgtgatgcccttagatgttctgggccgcacgcgcgctacactgatgtattcaacgagtatata |
42189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0052; HSP #9
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 23 - 115
Target Start/End: Complemental strand, 79756 - 79664
Alignment:
| Q |
23 |
agcgatttgtctggttaattccgttaacgaacgagacctcagcctgctaaatagctatgtggaggtaaccctccacggccagcttcttagagg |
115 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
79756 |
agcgatttgtctagttaattccgttaacgaacgagacctcagcctgctaaatagctatgtggaggtaaccctccacggccagcttcttagagg |
79664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0021 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: scaffold0021
Description:
Target: scaffold0021; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 23 - 293
Target Start/End: Complemental strand, 46071 - 45801
Alignment:
| Q |
23 |
agcgatttgtctggttaattccgttaacgaacgagacctcagcctgctaaatagctatgtggaggtaaccctccacggccagcttcttagagggactatg |
122 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46071 |
agcgatttgtctggttaattccgttaacgaacgagacctcagcctgctaaatagctatgtggaggtaaccctccacggccagcttcttagagggactatg |
45972 |
T |
|
| Q |
123 |
gccgcttaggccacggaagtttgaggcaataacaggtctgtgatgcccttagatgttctgggccgcacgcgcgctacactgatgtattcaacgagtctat |
222 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45971 |
gccgcttaggccacggaagtttgaggcaataacaggtctgtgatgcccttagatgttctgggccgcacgcgcgctacactgatgtattcaacgagtctat |
45872 |
T |
|
| Q |
223 |
agccttggccgacaggcccgggtaatctttgaaatttcatcgtgatggggatagatcattgcaattgttgg |
293 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45871 |
agccttggccgacaggcccgggtaatctttgaaatttcatcgtgatggggatagatcattgcaattgttgg |
45801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0515 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: scaffold0515
Description:
Target: scaffold0515; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 88 - 292
Target Start/End: Original strand, 7550 - 7754
Alignment:
| Q |
88 |
taaccctccacggccagcttcttagagggactatggccgcttaggccacggaagtttgaggcaataacaggtctgtgatgcccttagatgttctgggccg |
187 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
7550 |
taaccctccacggccagcttcttagagggattatggccgcttaggccacggaagtttaaggcaataacaggtctgtgatgctcttagatgttctgggccg |
7649 |
T |
|
| Q |
188 |
cacgcgcgctacactgatgtattcaacgagtctatagccttggccgacaggcccgggtaatctttgaaatttcatcgtgatggggatagatcattgcaat |
287 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||| |
|
|
| T |
7650 |
cacgcgcgctacactgatgtattcaacgagtctatagccttggccgacaggcccgggtaatctttgaaatttcatcatgatggtgatagatcattgcaat |
7749 |
T |
|
| Q |
288 |
tgttg |
292 |
Q |
| |
|
||||| |
|
|
| T |
7750 |
tgttg |
7754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0306 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: scaffold0306
Description:
Target: scaffold0306; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 88 - 292
Target Start/End: Original strand, 7560 - 7764
Alignment:
| Q |
88 |
taaccctccacggccagcttcttagagggactatggccgcttaggccacggaagtttgaggcaataacaggtctgtgatgcccttagatgttctgggccg |
187 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
7560 |
taaccctccacggccagcttcttagagggattatggccgcttaggccacggaagtttaaggcaataacaggtctgtgatgctcttagatgttctgggccg |
7659 |
T |
|
| Q |
188 |
cacgcgcgctacactgatgtattcaacgagtctatagccttggccgacaggcccgggtaatctttgaaatttcatcgtgatggggatagatcattgcaat |
287 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||| |
|
|
| T |
7660 |
cacgcgcgctacactgatgtattcaacgagtctatagccttggccgacaggcccgggtaatctttgaaatttcatcatgatggtgatagatcattgcaat |
7759 |
T |
|
| Q |
288 |
tgttg |
292 |
Q |
| |
|
||||| |
|
|
| T |
7760 |
tgttg |
7764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0152 (Bit Score: 181; Significance: 8e-98; HSPs: 1)
Name: scaffold0152
Description:
Target: scaffold0152; HSP #1
Raw Score: 181; E-Value: 8e-98
Query Start/End: Original strand, 88 - 292
Target Start/End: Original strand, 25171 - 25375
Alignment:
| Q |
88 |
taaccctccacggccagcttcttagagggactatggccgcttaggccacggaagtttgaggcaataacaggtctgtgatgcccttagatgttctgggccg |
187 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
25171 |
taaccctccacggccagcttcttagagggattatggccgcttaggccacggaagtttaaggcaataacaggtctgtgatgcccttcgatgttctgggccg |
25270 |
T |
|
| Q |
188 |
cacgcgcgctacactgatgtattcaacgagtctatagccttggccgacaggcccgggtaatctttgaaatttcatcgtgatggggatagatcattgcaat |
287 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||| |||||||||||||||| |
|
|
| T |
25271 |
cacgcgcgctacactgatgtattcaacgagtctatagccttggccgataggcccgggtaatctttgaaatttcatcatgatggtgatagatcattgcaat |
25370 |
T |
|
| Q |
288 |
tgttg |
292 |
Q |
| |
|
||||| |
|
|
| T |
25371 |
tgttg |
25375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 118; Significance: 3e-60; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 23 - 156
Target Start/End: Complemental strand, 37967498 - 37967365
Alignment:
| Q |
23 |
agcgatttgtctggttaattccgttaacgaacgagacctcagcctgctaaatagctatgtggaggtaaccctccacggccagcttcttagagggactatg |
122 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
37967498 |
agcgatttgtgtggttaattccgttaacgaacgagacctcagcttgctaaataactatgtggaggtaaccctccacagccagcttcttagagggactatg |
37967399 |
T |
|
| Q |
123 |
gccgcttaggccacggaagtttgaggcaataaca |
156 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
37967398 |
gccgcttaggccacggaagtttgaggcaataaca |
37967365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 91; Significance: 4e-44; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 66 - 160
Target Start/End: Original strand, 14379964 - 14380058
Alignment:
| Q |
66 |
ctgctaaatagctatgtggaggtaaccctccacggccagcttcttagagggactatggccgcttaggccacggaagtttgaggcaataacaggtc |
160 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
14379964 |
ctgctaaatagctatgtggaggtaaccctccacggccagcttcttagagggactatggccgcttagaccacggaagtttgaggcaataacaggtc |
14380058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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