View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1715_low_129 (Length: 307)
Name: NF1715_low_129
Description: NF1715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1715_low_129 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 28 - 307
Target Start/End: Original strand, 3045565 - 3045838
Alignment:
| Q |
28 |
agaaaatcaaccacagatacacatatcagagaatatttagagattactatgttttgggtgaaattgcgaccga-tctagggacggatctagaaatttaaa |
126 |
Q |
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| T |
3045565 |
agaaaatcaaccacagatacacatatcagagaatatttagagattgctatgtttg-------attgtctctgaatacagggacggaactagaaatttaat |
3045657 |
T |
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| Q |
127 |
taaaatgggtcaaaatcttatcataaatgaatctcaaatcaatcttaattatttcaaaatattaatttttcgagttgtatgtagacatggactaagttat |
226 |
Q |
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| T |
3045658 |
taagatgggtcaaaatcttatcataaatgaatctcaaatcaatcttaattatttcaaaatattaatttttggagttgtatgtagacatggactaagttat |
3045757 |
T |
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| Q |
227 |
atgaattttataatttcttgtaaatgttgtacatttaaaaaattatttttcctttcataaattatactttcaatttggtcc |
307 |
Q |
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| T |
3045758 |
atgaatcttataatttcttgtaaatgttgtacatttaaaaaattatttttcctttcataaattatactttcaatttggtcc |
3045838 |
T |
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Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 234 - 304
Target Start/End: Original strand, 14823713 - 14823783
Alignment:
| Q |
234 |
ttataatttcttgtaaatgttgtacatttaaaaaattatttttcctttcataaattatactttcaatttgg |
304 |
Q |
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| T |
14823713 |
ttataattttttgtatatgttgtacatttgagaatttattttttctttgataaattttactttcaatttgg |
14823783 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 234 - 296
Target Start/End: Complemental strand, 36651209 - 36651148
Alignment:
| Q |
234 |
ttataatttcttgtaaatgttgtacatttaaaaaattatttttcctttcataaattatacttt |
296 |
Q |
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| T |
36651209 |
ttataatttcttgtaaatgttatgcatttgaaaatttattttt-ctttactaaattatacttt |
36651148 |
T |
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