View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1715_low_13 (Length: 577)
Name: NF1715_low_13
Description: NF1715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1715_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 503; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 503; E-Value: 0
Query Start/End: Original strand, 16 - 559
Target Start/End: Original strand, 4205233 - 4205778
Alignment:
| Q |
16 |
ataattctggtgtgggagctaacaagtaaacaaaatcacctttattgtcgaatactttagagccaaaaggctttccaatccaatcagaatgtttaaaagc |
115 |
Q |
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| T |
4205233 |
ataattctggtgtgggagctaacaagtaaacaaaatcacccttattgttgaatactttagagccaaaaggctttccaatccaatcagaatgtttaaaagc |
4205332 |
T |
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| Q |
116 |
acctaaagagttctgaaagactgaaccctcagacactgttacagctttcatattgccatgttttacgtaaacaataacaagattgccgtcatgaatcttt |
215 |
Q |
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| T |
4205333 |
acctaaagagttctgaaagactgaaccctcagacactgttacagctttcatattgccatgttttacgtaaacaataacaagattgccgtcatgaatcttt |
4205432 |
T |
|
| Q |
216 |
cggttgagtgctattgttttttcaggattactagtcaataacatcttgaaaggcttcaaatttttcaacctagtgaaaaagaaaaaccatatgtcatcca |
315 |
Q |
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| T |
4205433 |
cggttgaatgctattgttttttcaggattactagtcaataacatcttgaaaggcttcaaatttttcaacctagtgaaaaagaaaaaccatatgtcatcca |
4205532 |
T |
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| Q |
316 |
caagccaattac--atgtgattatgtgtgagtatatatagggtatgtttcgataaacaacttaatttaaggcttgtaagataagtgattatcacataagt |
413 |
Q |
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| T |
4205533 |
caagccaattacatatgtgattatgtgtgagtatatatagggtatgtttcgataaacaacttaatttaaggcttgtaaggtaagtcattatcatataagt |
4205632 |
T |
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| Q |
414 |
gcttgtctatacatcatttctatataataagataaaatgatttcacaagtaaacaaaacattattggaaaaaataattgaatggatgaaggtgaaaccaa |
513 |
Q |
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| T |
4205633 |
gcttgtctatacatcatttctatataataagataaaatgaattcacaagtaaacaaaacattattggaaaaaataattgaatggatgaaggggaaaccaa |
4205732 |
T |
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| Q |
514 |
ccaatatagatttgaatttgaaccaacaaatttggattgacctaaa |
559 |
Q |
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| T |
4205733 |
ccaatatagatttgaatttgaaccaacaaatttggattgacctaaa |
4205778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 358 - 414
Target Start/End: Original strand, 32634225 - 32634281
Alignment:
| Q |
358 |
tgtttcgataaacaacttaatttaaggcttgtaagataagtgattatcacataagtg |
414 |
Q |
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| T |
32634225 |
tgtttggataaacaacttaatttaacgcttataccataagggtttatcacataagtg |
32634281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 33 - 118
Target Start/End: Complemental strand, 17241898 - 17241813
Alignment:
| Q |
33 |
gctaacaagtaaacaaaatcacctttattgtcgaatactttagagccaaaaggctttccaatccaatcagaatgtttaaaagcacc |
118 |
Q |
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| T |
17241898 |
gctaataagtaaacaaaaccgcccttattgctgaatactttagacccaaatgactttcctatccaatctgaatgtttaaaaacacc |
17241813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 360 - 424
Target Start/End: Original strand, 23999039 - 23999103
Alignment:
| Q |
360 |
tttcgataaacaacttaatttaaggcttgtaagataagtgattatcacataagtgcttgtctata |
424 |
Q |
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| T |
23999039 |
tttcgataaacaacttaattaaatgcttatagaataagggcttatcatataagtgcttgtgtata |
23999103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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