View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1715_low_132 (Length: 303)
Name: NF1715_low_132
Description: NF1715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1715_low_132 |
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Alignment Details
Target: chr6 (Bit Score: 95; Significance: 2e-46; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 11 - 153
Target Start/End: Complemental strand, 27141820 - 27141679
Alignment:
| Q |
11 |
atatatggtgtaagaagctaaattggttcgaacctgagaccttgaagaaaagcatactttcaagttttaagtcaatatcatcaagctaacccaaatgggt |
110 |
Q |
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| T |
27141820 |
atatatggtgtaagaagctaaattgatttaaatctgagaccttgaagaagagcacacttccaaaatttaagtcaatatcaccaagctaacccaaatgggt |
27141721 |
T |
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| Q |
111 |
tcacttacaatatagtgttatatatggaattcattaaatcaca |
153 |
Q |
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| T |
27141720 |
tcacttacaatatagt-ttatatatggaattcattaaatcaca |
27141679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 219 - 293
Target Start/End: Complemental strand, 27141645 - 27141571
Alignment:
| Q |
219 |
ggttgtagtaatttttgaataaatattgtagtcaaccatagtcaaactaggaataatacacactagaataatcta |
293 |
Q |
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| T |
27141645 |
ggttgtagtaatttttgaataaatattgtagtcaaccatagtcaaactaggaataatacacactagaacaatcta |
27141571 |
T |
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