View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1715_low_136 (Length: 293)
Name: NF1715_low_136
Description: NF1715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1715_low_136 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 13 - 293
Target Start/End: Complemental strand, 5176175 - 5175895
Alignment:
| Q |
13 |
aatattggtgtgtctcaatcatctgcatgttgagattgtagtcttgatgcatggcgttcacatgtgttggaaagaaggttcacgtaaaatcatgttacat |
112 |
Q |
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| T |
5176175 |
aatattggtgtgtctcaatcatctgcatgttgagattgtagtcttgatacatggcgttcacatgtgttggaaagaaggttcacgtaaaatcatgttacat |
5176076 |
T |
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| Q |
113 |
cgactcaaaacacactctaaatgtttcaaagtgttggtgttactacacaacatttagaccgtgagatagtcgttatttgtcaataaatgatcaaatattg |
212 |
Q |
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| T |
5176075 |
cgactcaaaacacactctaaatgtttcaaagtgttggtgttactacacaacatttaggccgtgagatagtcgttattcgtcaataaatgatcaaatattg |
5175976 |
T |
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| Q |
213 |
gagtcttcatttgcatcaaatgtagcatgaagggaacacgtgccatgattatcttgtcaagattggtgctagatccagcag |
293 |
Q |
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| T |
5175975 |
gagtcttcaattgcatcaaatgttgcatgaagggaacacgtgccatgattatcttgtcaagattggtgctagatccagcag |
5175895 |
T |
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Target: chr8 (Bit Score: 141; Significance: 6e-74; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 35 - 292
Target Start/End: Complemental strand, 5180440 - 5180181
Alignment:
| Q |
35 |
ctgcatgttgagattgtagtcttgatgcatggcgttcacatgtgttggaaagaaggttcacgtaaaatcatgttacatcgactcaaaaca--cactctaa |
132 |
Q |
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| T |
5180440 |
ctgcaagttgagattgtagccttgatgcatggcgttcgcatgtgttggaaagaaggttcgcgtaaaatcatgttacattgactagaaacatacactccaa |
5180341 |
T |
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| Q |
133 |
atgtttcaaagtgttggtgttactacacaacatttagaccgtgagatagtcgttatttgtcaataaatgatcaaatattggagtcttcatttgcatcaaa |
232 |
Q |
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|||||| || ||||||||||||||||||||||||| | ||||||| |||||||| ||||||| ||||||||||||||||||||||| ||||||||| |
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| T |
5180340 |
ttgtttccaattgttggtgttactacacaacatttaagcaatgagataatcgttattcgtcaatatatgatcaaatattggagtcttcaactgcatcaaa |
5180241 |
T |
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| Q |
233 |
tgtagcatgaagggaacacgtgccatgattatcttgtcaagattggtgctagatccagca |
292 |
Q |
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| T |
5180240 |
cgttccatgaagtgaacatgtgccatgattttcttgtcaagattggtgctagaaccagca |
5180181 |
T |
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