View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1715_low_138 (Length: 289)
Name: NF1715_low_138
Description: NF1715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1715_low_138 |
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Alignment Details
Target: chr3 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 14 - 271
Target Start/End: Original strand, 3045962 - 3046218
Alignment:
| Q |
14 |
aatatgggaagagaaaatgattccctaataatgaataattggagagttggtagaacaagagtaacaagacaatgctttctgctaaattaacattaagaaa |
113 |
Q |
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| T |
3045962 |
aatatgggaagagaaaatgattccctaataatgaataattggagagttggtagaacaagagtaacaagacaatgctttctgctaaattaacattaagaaa |
3046061 |
T |
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| Q |
114 |
tatcaacattggatcnnnnnnncttatgaacttaaaaaatggaaaagtaacattggatctttgaacacaaataataatgaataagacagacactaatcaa |
213 |
Q |
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| T |
3046062 |
cataaacattggatctttttttcttatgaacttaaaaaatggaaaagtaacattggatgtttgaacacaaat-ataatgaataagacagacacttatcaa |
3046160 |
T |
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| Q |
214 |
taggctgtatacctcttcattgctaagtgctaacgtcatggctgacggggtttaacct |
271 |
Q |
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| T |
3046161 |
taggctgtatacctcttcattgctaagtgctaacgtcatggctgacggggtttaacct |
3046218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 85
Target Start/End: Original strand, 3018027 - 3018091
Alignment:
| Q |
22 |
aagagaaaatgattccctaataa-tgaataattggagagttggtagaacaagagtaacaagacaa |
85 |
Q |
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| T |
3018027 |
aagagaaaatgatttcctaataagtgaataattgaagaggtaatagtacaagagtaacaagacaa |
3018091 |
T |
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