View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1715_low_14 (Length: 575)
Name: NF1715_low_14
Description: NF1715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1715_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 491; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 491; E-Value: 0
Query Start/End: Original strand, 1 - 564
Target Start/End: Original strand, 42655700 - 42656264
Alignment:
| Q |
1 |
cgtaattccgaatcagaattgtgtcacaatccatgccactattttgcaacaaaattgtcaagagccaaagaaaagaacgagaatctgatcacaaattcat |
100 |
Q |
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| T |
42655700 |
cgtaattccgaatcagaattgtgtcacaatccatgccactattttgcaacaaaattgtcaagagccaaagaaaagaacgagaatctgatcacaaattcat |
42655799 |
T |
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| Q |
101 |
cacccgcactcatgtaggaaaatttcattttaatttggagagaaaagcatatcactannnnnnnnnnnnnna-aaacagtaaatatcaatggaatctctc |
199 |
Q |
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| T |
42655800 |
cacccgcacttatgtaggaaaatttcattttaatttggagagaaaagcatatcactgttttttttttttttttaaacaataaatatcaatggaatctctc |
42655899 |
T |
|
| Q |
200 |
aaggcaaaattgacacgtgcccaacaattttctgtcataacaaaacaaaacggacaaaataagagcggtgattttgttaacatctgtggaatctaatcta |
299 |
Q |
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| T |
42655900 |
aaggcaaaattgacacgtgcccaacaattttctgtcataacaaaacaaaacggacaaaataatagcggtgattttgttaacatctgtggaatctaatcta |
42655999 |
T |
|
| Q |
300 |
aggtttgagagtaaagttaaataggccagggaaatatgcaattagaaatattagaaaaataacaaaaaggcgagattccttttgctaaaattctacctga |
399 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42656000 |
aggtttgagagtaaagttaaataggccagggaaatatgtaattagaaatattagaaaaataacaaaaaggcgagattccttttgctaaaattctacctga |
42656099 |
T |
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| Q |
400 |
tgaaaatctacatagattattatatttatgtgactactatgtatttatgttatatagagtacaagaatatatattgataatgagccctgttgtgtaactt |
499 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42656100 |
tgaaaatctacatagattattatatttatgtgactactatgtatttatgttatatagagtacaagaatatatattgataatgagccctgttgtgtaactt |
42656199 |
T |
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| Q |
500 |
ttaaaaaattaagtaccactagttgctcaaagattatataggttagcttagcctcatgagttcat |
564 |
Q |
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| T |
42656200 |
ttaaaaaattaagtaccactagttgctcaaagattatataggttagcttagcctcatgagttcat |
42656264 |
T |
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