View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1715_low_143 (Length: 282)
Name: NF1715_low_143
Description: NF1715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1715_low_143 |
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Alignment Details
Target: chr2 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 18 - 267
Target Start/End: Original strand, 11885491 - 11885740
Alignment:
| Q |
18 |
caccctacgttgtttttcaaaaagaaaagtaaaatggtgggcttcgtcgtctaccgtcagctccacttcgatcatataatttttattgtcaacctgtacg |
117 |
Q |
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| T |
11885491 |
caccctacattgtttttcaaaaagaaaagtaaaatggtgggcttcgtcgtcgactgtcagctccacttagaccatataatttttattgtcaacctgtacg |
11885590 |
T |
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| Q |
118 |
acactaatatcaccacaaatacttctgccgcctccttctgtgaaaactcgatcgaaacaacactcctccttcgtagcgatgtataccccaagtctagctt |
217 |
Q |
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| T |
11885591 |
acactaatatcaccacagatacttccgccgcctccttctgtgaaaactcgatcgaaacaacgctcctccttcgcagcgatgtataccccaagtctacctt |
11885690 |
T |
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| Q |
218 |
cttcgtcaacttttccatcgatcccaaggtaaacacgttgaagttctgtg |
267 |
Q |
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| T |
11885691 |
cttcgtcaacttttccatcgatcccaaggtaaacacgttgaagttctgtg |
11885740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 114
Target Start/End: Original strand, 13867625 - 13867702
Alignment:
| Q |
37 |
aaaagaaaagtaaaatggtgggcttcgtcgtctaccgtcagctccacttcgatcatataatttttattgtcaacctgt |
114 |
Q |
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||||||||| ||||||||||||| ||||||| ||||||||| | || | |||||||| |||| || |||||||||| |
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| T |
13867625 |
aaaagaaaaataaaatggtgggcaccgtcgtcgaccgtcagcccaacgtggatcatatcatttacatcgtcaacctgt |
13867702 |
T |
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